miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 74937 0.7 0.480867
Target:  5'- gCGCGCGGC-CGCGCG-GAUgCggugcUGGGGc -3'
miRNA:   3'- -GCGCGUCGcGCGCGCaCUA-Ga----GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 40539 0.71 0.419179
Target:  5'- cCGcCGCGGCGCGCG-GUGGugcgguUCUCGaGGa -3'
miRNA:   3'- -GC-GCGUCGCGCGCgCACU------AGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 73411 0.71 0.4277
Target:  5'- -cCGCAGCuCGUGgaCGUGGUgCUCGGGGa -3'
miRNA:   3'- gcGCGUCGcGCGC--GCACUA-GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 84564 0.71 0.4277
Target:  5'- aCGCGCGGCa-GCGCGUGAcCgCGaGGGu -3'
miRNA:   3'- -GCGCGUCGcgCGCGCACUaGaGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 9658 0.7 0.436321
Target:  5'- --aGCAGCcCGCGCGUGAgCUCGGu- -3'
miRNA:   3'- gcgCGUCGcGCGCGCACUaGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 29218 0.7 0.436321
Target:  5'- uGCGCAGCGcCGCGCGg---C-CGGGc -3'
miRNA:   3'- gCGCGUCGC-GCGCGCacuaGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 46460 0.7 0.445043
Target:  5'- gCGCGCGGCGCGCcgGCGaGcUCcCGGGc -3'
miRNA:   3'- -GCGCGUCGCGCG--CGCaCuAGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 109532 0.7 0.468164
Target:  5'- cCGCGCGGCGCgauggcgguguaggGCGCGUacccgcgGAacUCcgCGGGGu -3'
miRNA:   3'- -GCGCGUCGCG--------------CGCGCA-------CU--AGa-GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 126435 0.7 0.469066
Target:  5'- gGCGC-GCGUGCGCGUGuaccaccgcgcgcuGUCgCGGaGGa -3'
miRNA:   3'- gCGCGuCGCGCGCGCAC--------------UAGaGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 122377 0.71 0.419179
Target:  5'- aCGCGCAuguGCGUGCGCGaGGUCgugcugcgCGGcGGc -3'
miRNA:   3'- -GCGCGU---CGCGCGCGCaCUAGa-------GCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 128321 0.71 0.410762
Target:  5'- gCGCGCGGCGCGaGCGcGAcugCUCGGu- -3'
miRNA:   3'- -GCGCGUCGCGCgCGCaCUa--GAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 13821 0.71 0.386153
Target:  5'- gCGCGCucgAGCGCGCcccGCaggGA-CUCGGGGg -3'
miRNA:   3'- -GCGCG---UCGCGCG---CGca-CUaGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 121569 0.76 0.2208
Target:  5'- aGCGCGGCGCGCGCGcgGAcgCcacCGGGa -3'
miRNA:   3'- gCGCGUCGCGCGCGCa-CUa-Ga--GCCCc -5'
25687 5' -60.9 NC_005337.1 + 38605 0.75 0.22607
Target:  5'- aGCGCAGCGUGgGCGUGc---UGGGGa -3'
miRNA:   3'- gCGCGUCGCGCgCGCACuagaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 97068 0.75 0.231446
Target:  5'- aCGCGCGGCGCGCG-GUGGUCUgCGu-- -3'
miRNA:   3'- -GCGCGUCGCGCGCgCACUAGA-GCccc -5'
25687 5' -60.9 NC_005337.1 + 129533 0.75 0.254035
Target:  5'- gCGCGCGGCGCgaGCGUccGUGAUCUCGa-- -3'
miRNA:   3'- -GCGCGUCGCG--CGCG--CACUAGAGCccc -5'
25687 5' -60.9 NC_005337.1 + 98879 0.74 0.265993
Target:  5'- cCGCGCcGCGCGCGCG-GAcugcgcgcUCgagccCGGGGa -3'
miRNA:   3'- -GCGCGuCGCGCGCGCaCU--------AGa----GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 29722 0.73 0.311434
Target:  5'- gCGCGCAcGCGCGCGCgGUGuug-CGGcGGa -3'
miRNA:   3'- -GCGCGU-CGCGCGCG-CACuagaGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 104198 0.72 0.362538
Target:  5'- uGCGCgAGCGC-CGCGccAUcCUCGGGGa -3'
miRNA:   3'- gCGCG-UCGCGcGCGCacUA-GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 38479 0.71 0.382946
Target:  5'- gCGCGCcgGGCGCGCGCGUcgccgagcuggccGAcgacgucgccgcgaUCgCGGGGa -3'
miRNA:   3'- -GCGCG--UCGCGCGCGCA-------------CU--------------AGaGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.