Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25695 | 5' | -60.2 | NC_005337.1 | + | 127783 | 0.66 | 0.683225 |
Target: 5'- aGCCGCCGaucgaccuccucgucCGCGcGCUGGucaccgccacCAACUGGg -3' miRNA: 3'- gCGGCGGC---------------GUGCaCGACCc---------GUUGACC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 97921 | 0.66 | 0.728205 |
Target: 5'- gGCCGCCGCcCGU---GGGCGugaUGGc -3' miRNA: 3'- gCGGCGGCGuGCAcgaCCCGUug-ACC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 84610 | 0.66 | 0.689157 |
Target: 5'- gCGaCGCCGUG-GUGCUGGGCGucacGCUcacGGa -3' miRNA: 3'- -GCgGCGGCGUgCACGACCCGU----UGA---CC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 119851 | 0.66 | 0.708805 |
Target: 5'- -aCUGCCGCACGUGuCUccuGGCGGCgcGGu -3' miRNA: 3'- gcGGCGGCGUGCAC-GAc--CCGUUGa-CC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 80399 | 0.66 | 0.699008 |
Target: 5'- gGCUGCCGC-UGUGuCUGcucgcgguGGCGucGCUGGu -3' miRNA: 3'- gCGGCGGCGuGCAC-GAC--------CCGU--UGACC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 35967 | 0.66 | 0.689157 |
Target: 5'- aCGCCGCCGCg---GCaggGGGUAACa-- -3' miRNA: 3'- -GCGGCGGCGugcaCGa--CCCGUUGacc -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 960 | 0.66 | 0.699008 |
Target: 5'- gGCgGCgGCGgG-GCUGGaGCGGCgGGg -3' miRNA: 3'- gCGgCGgCGUgCaCGACC-CGUUGaCC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 65337 | 0.66 | 0.699008 |
Target: 5'- uGCCGCCGCGCGgGUacGGGuCGAUg-- -3' miRNA: 3'- gCGGCGGCGUGCaCGa-CCC-GUUGacc -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 70363 | 0.66 | 0.728205 |
Target: 5'- gCGCCGCCGCACGUGgUc-GCGuccguagaaguACUGc -3' miRNA: 3'- -GCGGCGGCGUGCACgAccCGU-----------UGACc -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 1022 | 0.66 | 0.728205 |
Target: 5'- gGCCGUCgaauuucacuuuGCGCGggagGC-GGGCGGCgGGa -3' miRNA: 3'- gCGGCGG------------CGUGCa---CGaCCCGUUGaCC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 960 | 0.66 | 0.699008 |
Target: 5'- gGCgGCgGCGgG-GCUGGaGCGGCgGGg -3' miRNA: 3'- gCGgCGgCGUgCaCGACC-CGUUGaCC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 97790 | 0.66 | 0.68817 |
Target: 5'- cCGCgGCCGCGgccaggcCGUGC--GGCAGgUGGu -3' miRNA: 3'- -GCGgCGGCGU-------GCACGacCCGUUgACC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 67948 | 0.66 | 0.699008 |
Target: 5'- cCGUCGCCGaagACGa--UGGGCucGCUGGa -3' miRNA: 3'- -GCGGCGGCg--UGCacgACCCGu-UGACC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 24035 | 0.66 | 0.728205 |
Target: 5'- aCGCgGCucaCGCAgcUGUGCUcGGGCGACgcGGc -3' miRNA: 3'- -GCGgCG---GCGU--GCACGA-CCCGUUGa-CC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 69444 | 0.66 | 0.689157 |
Target: 5'- gCGCCaGCuCGCGCGcGCacaUGGGCAgguACcGGg -3' miRNA: 3'- -GCGG-CG-GCGUGCaCG---ACCCGU---UGaCC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 34872 | 0.67 | 0.629387 |
Target: 5'- cCGCCGCC-CGCgGUGCgcagcaccGGCAGgUGGu -3' miRNA: 3'- -GCGGCGGcGUG-CACGac------CCGUUgACC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 16046 | 0.67 | 0.619388 |
Target: 5'- gCGCCuGCCGC-CGcGC-GGGCcGCUGa -3' miRNA: 3'- -GCGG-CGGCGuGCaCGaCCCGuUGACc -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 128082 | 0.67 | 0.669328 |
Target: 5'- aGUCGCCGCGCccgagacccggaGUGCUaaGCgAACUGGu -3' miRNA: 3'- gCGGCGGCGUG------------CACGAccCG-UUGACC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 60938 | 0.67 | 0.629387 |
Target: 5'- gCGCCacuGCCGCGCcggcaUGCgcaugGGGCGcgcgcccacgcGCUGGg -3' miRNA: 3'- -GCGG---CGGCGUGc----ACGa----CCCGU-----------UGACC- -5' |
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25695 | 5' | -60.2 | NC_005337.1 | + | 48302 | 0.67 | 0.649384 |
Target: 5'- gCGCCuCCGCAUgcgGUGCgcGGGCGcGCUGa -3' miRNA: 3'- -GCGGcGGCGUG---CACGa-CCCGU-UGACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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