miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25695 5' -60.2 NC_005337.1 + 50402 0.66 0.689157
Target:  5'- gGCgCGCCGCGCGUcgGUgacGGaGCGGCgGGc -3'
miRNA:   3'- gCG-GCGGCGUGCA--CGa--CC-CGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 73499 0.66 0.71854
Target:  5'- uCGCgGUCGUgaagGCgGUGCUGGGCAcccGCgaGGc -3'
miRNA:   3'- -GCGgCGGCG----UG-CACGACCCGU---UGa-CC- -5'
25695 5' -60.2 NC_005337.1 + 53704 0.66 0.679261
Target:  5'- aGCUGCCGCGCaUGCUGGaCA-C-GGa -3'
miRNA:   3'- gCGGCGGCGUGcACGACCcGUuGaCC- -5'
25695 5' -60.2 NC_005337.1 + 78231 0.66 0.71854
Target:  5'- aGCCGCaGCAUGUcGgUGGGCAugcGGu -3'
miRNA:   3'- gCGGCGgCGUGCA-CgACCCGUugaCC- -5'
25695 5' -60.2 NC_005337.1 + 7040 0.66 0.689157
Target:  5'- gGCCGa-GCACGUcgggGC-GGGCGGCgGGg -3'
miRNA:   3'- gCGGCggCGUGCA----CGaCCCGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 87585 0.66 0.699008
Target:  5'- aGUCGCCGaccucccgGCGccGCUcGGGCGACUGc -3'
miRNA:   3'- gCGGCGGCg-------UGCa-CGA-CCCGUUGACc -5'
25695 5' -60.2 NC_005337.1 + 18406 0.66 0.679261
Target:  5'- uCGuCUGuuGCuCGagGgaGGGCGGCUGGg -3'
miRNA:   3'- -GC-GGCggCGuGCa-CgaCCCGUUGACC- -5'
25695 5' -60.2 NC_005337.1 + 960 0.66 0.699008
Target:  5'- gGCgGCgGCGgG-GCUGGaGCGGCgGGg -3'
miRNA:   3'- gCGgCGgCGUgCaCGACC-CGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 58735 0.66 0.679261
Target:  5'- gCGCCGgCGCGgGUGCaccGGaGCAGCa-- -3'
miRNA:   3'- -GCGGCgGCGUgCACGa--CC-CGUUGacc -5'
25695 5' -60.2 NC_005337.1 + 68138 0.66 0.679261
Target:  5'- gGUgGCCGCGCGcGCcccuagcGGGCGGC-GGa -3'
miRNA:   3'- gCGgCGGCGUGCaCGa------CCCGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 109221 0.66 0.728205
Target:  5'- aCGCCGcCCGCACG-GCgc-GCAGCa-- -3'
miRNA:   3'- -GCGGC-GGCGUGCaCGaccCGUUGacc -5'
25695 5' -60.2 NC_005337.1 + 124031 0.66 0.689157
Target:  5'- gCGCCccgcgaagGCCGCGCGccUGCc--GCGGCUGGa -3'
miRNA:   3'- -GCGG--------CGGCGUGC--ACGaccCGUUGACC- -5'
25695 5' -60.2 NC_005337.1 + 2795 0.66 0.679261
Target:  5'- cCGgUGCCGCAUGUGCacuaGGCGcuGCUGc -3'
miRNA:   3'- -GCgGCGGCGUGCACGac--CCGU--UGACc -5'
25695 5' -60.2 NC_005337.1 + 1022 0.66 0.728205
Target:  5'- gGCCGUCgaauuucacuuuGCGCGggagGC-GGGCGGCgGGa -3'
miRNA:   3'- gCGGCGG------------CGUGCa---CGaCCCGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 38606 0.66 0.71854
Target:  5'- gCGCaGCgUGgGCGUGCUGGGgAACccGGa -3'
miRNA:   3'- -GCGgCG-GCgUGCACGACCCgUUGa-CC- -5'
25695 5' -60.2 NC_005337.1 + 103237 0.66 0.689157
Target:  5'- gCGUCGCCGCAaGcGcCUGGGCuuCUucGGg -3'
miRNA:   3'- -GCGGCGGCGUgCaC-GACCCGuuGA--CC- -5'
25695 5' -60.2 NC_005337.1 + 127570 0.66 0.728205
Target:  5'- gGCUGCUGCugGagGCgGGcGCAGCcgUGGn -3'
miRNA:   3'- gCGGCGGCGugCa-CGaCC-CGUUG--ACC- -5'
25695 5' -60.2 NC_005337.1 + 115205 0.66 0.728205
Target:  5'- -cUCGCCGCACcUGCUGuGGCcGC-GGc -3'
miRNA:   3'- gcGGCGGCGUGcACGAC-CCGuUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 97921 0.66 0.728205
Target:  5'- gGCCGCCGCcCGU---GGGCGugaUGGc -3'
miRNA:   3'- gCGGCGGCGuGCAcgaCCCGUug-ACC- -5'
25695 5' -60.2 NC_005337.1 + 97268 0.66 0.689157
Target:  5'- aGCCGgCGCuucgACGUGCUGGuGCucGACg-- -3'
miRNA:   3'- gCGGCgGCG----UGCACGACC-CG--UUGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.