miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25695 5' -60.2 NC_005337.1 + 821 0.67 0.658369
Target:  5'- aGCCGuCCGCGCGcgcgggcccggGCUcgacgaaggcggcGGGCAGCgcgGGc -3'
miRNA:   3'- gCGGC-GGCGUGCa----------CGA-------------CCCGUUGa--CC- -5'
25695 5' -60.2 NC_005337.1 + 821 0.67 0.658369
Target:  5'- aGCCGuCCGCGCGcgcgggcccggGCUcgacgaaggcggcGGGCAGCgcgGGc -3'
miRNA:   3'- gCGGC-GGCGUGCa----------CGA-------------CCCGUUGa--CC- -5'
25695 5' -60.2 NC_005337.1 + 960 0.66 0.699008
Target:  5'- gGCgGCgGCGgG-GCUGGaGCGGCgGGg -3'
miRNA:   3'- gCGgCGgCGUgCaCGACC-CGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 960 0.66 0.699008
Target:  5'- gGCgGCgGCGgG-GCUGGaGCGGCgGGg -3'
miRNA:   3'- gCGgCGgCGUgCaCGACC-CGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 1022 0.66 0.728205
Target:  5'- gGCCGUCgaauuucacuuuGCGCGggagGC-GGGCGGCgGGa -3'
miRNA:   3'- gCGGCGG------------CGUGCa---CGaCCCGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 1022 0.66 0.728205
Target:  5'- gGCCGUCgaauuucacuuuGCGCGggagGC-GGGCGGCgGGa -3'
miRNA:   3'- gCGGCGG------------CGUGCa---CGaCCCGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 2795 0.66 0.679261
Target:  5'- cCGgUGCCGCAUGUGCacuaGGCGcuGCUGc -3'
miRNA:   3'- -GCgGCGGCGUGCACGac--CCGU--UGACc -5'
25695 5' -60.2 NC_005337.1 + 3478 0.76 0.214495
Target:  5'- uCGUCGCgacUGCGCGUGCUGGuGCAGgaGGu -3'
miRNA:   3'- -GCGGCG---GCGUGCACGACC-CGUUgaCC- -5'
25695 5' -60.2 NC_005337.1 + 4576 0.71 0.398617
Target:  5'- uGCUGCCGCgggcgcggcgacugcGCGUGCUGGuGCAGgaGc -3'
miRNA:   3'- gCGGCGGCG---------------UGCACGACC-CGUUgaCc -5'
25695 5' -60.2 NC_005337.1 + 7040 0.66 0.689157
Target:  5'- gGCCGa-GCACGUcgggGC-GGGCGGCgGGg -3'
miRNA:   3'- gCGGCggCGUGCA----CGaCCCGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 7856 0.71 0.3953
Target:  5'- aCGCgCGCCGuCGCGcGCcGGGCGGCcuUGGc -3'
miRNA:   3'- -GCG-GCGGC-GUGCaCGaCCCGUUG--ACC- -5'
25695 5' -60.2 NC_005337.1 + 8279 0.67 0.639388
Target:  5'- aCGCgGCCGCgACGUGCagcgGGGU--CUGc -3'
miRNA:   3'- -GCGgCGGCG-UGCACGa---CCCGuuGACc -5'
25695 5' -60.2 NC_005337.1 + 8866 0.68 0.603411
Target:  5'- aCGCCGCCGUgcaugacggcacgcaGCGUGUcGGGCGu---- -3'
miRNA:   3'- -GCGGCGGCG---------------UGCACGaCCCGUugacc -5'
25695 5' -60.2 NC_005337.1 + 10356 0.69 0.536406
Target:  5'- uCGCCGCCGCAgCGguagcagaaccagGC-GGccacGCAGCUGGu -3'
miRNA:   3'- -GCGGCGGCGU-GCa------------CGaCC----CGUUGACC- -5'
25695 5' -60.2 NC_005337.1 + 11086 0.68 0.579552
Target:  5'- uCGCCGCCGCGacCGcaGCUggagagguaccGGGUGAUUGGc -3'
miRNA:   3'- -GCGGCGGCGU--GCa-CGA-----------CCCGUUGACC- -5'
25695 5' -60.2 NC_005337.1 + 14432 0.71 0.429255
Target:  5'- uGCCGCCGCugGcGCcGGGUAccgagcgccgcGCUGc -3'
miRNA:   3'- gCGGCGGCGugCaCGaCCCGU-----------UGACc -5'
25695 5' -60.2 NC_005337.1 + 14848 0.69 0.501958
Target:  5'- -uCCGCCGaGCgGUGCUGGcGCGACgGGc -3'
miRNA:   3'- gcGGCGGCgUG-CACGACC-CGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 16046 0.67 0.619388
Target:  5'- gCGCCuGCCGC-CGcGC-GGGCcGCUGa -3'
miRNA:   3'- -GCGG-CGGCGuGCaCGaCCCGuUGACc -5'
25695 5' -60.2 NC_005337.1 + 18406 0.66 0.679261
Target:  5'- uCGuCUGuuGCuCGagGgaGGGCGGCUGGg -3'
miRNA:   3'- -GC-GGCggCGuGCa-CgaCCCGUUGACC- -5'
25695 5' -60.2 NC_005337.1 + 18433 0.7 0.474009
Target:  5'- aGCCGCUccgccuugaGCACGgGC-GGGgGACUGGc -3'
miRNA:   3'- gCGGCGG---------CGUGCaCGaCCCgUUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.