miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25695 5' -60.2 NC_005337.1 + 47587 0.7 0.446864
Target:  5'- cCGCaGCCGCugG-GCgUGGGCGACg-- -3'
miRNA:   3'- -GCGgCGGCGugCaCG-ACCCGUUGacc -5'
25695 5' -60.2 NC_005337.1 + 44305 0.72 0.362349
Target:  5'- gCGCCGCUcccccgaGCGCGUGCUGcGGCcGCg-- -3'
miRNA:   3'- -GCGGCGG-------CGUGCACGAC-CCGuUGacc -5'
25695 5' -60.2 NC_005337.1 + 29793 0.71 0.3953
Target:  5'- uCGCCGCUGCGCGUGCUccGCGugcuccgcguACUGu -3'
miRNA:   3'- -GCGGCGGCGUGCACGAccCGU----------UGACc -5'
25695 5' -60.2 NC_005337.1 + 42547 0.71 0.412061
Target:  5'- gCGCUGCgggCGCugGUGC-GGcuGCGGCUGGa -3'
miRNA:   3'- -GCGGCG---GCGugCACGaCC--CGUUGACC- -5'
25695 5' -60.2 NC_005337.1 + 132948 0.71 0.412061
Target:  5'- cCGCCGCCGCGgccuCGUGCacGuGCAcCUGGu -3'
miRNA:   3'- -GCGGCGGCGU----GCACGacC-CGUuGACC- -5'
25695 5' -60.2 NC_005337.1 + 69891 0.71 0.419746
Target:  5'- uGCCGCCGCuccgacaACGUGCUccuGCGcgcGCUGGa -3'
miRNA:   3'- gCGGCGGCG-------UGCACGAcc-CGU---UGACC- -5'
25695 5' -60.2 NC_005337.1 + 39102 0.71 0.420605
Target:  5'- uCGCCGUgGCGCGgaaGCUcgcGGGCAGCg-- -3'
miRNA:   3'- -GCGGCGgCGUGCa--CGA---CCCGUUGacc -5'
25695 5' -60.2 NC_005337.1 + 127600 0.71 0.420605
Target:  5'- aCGUCGCCGaguCGUGCugUGGGUGcacgccGCUGGa -3'
miRNA:   3'- -GCGGCGGCgu-GCACG--ACCCGU------UGACC- -5'
25695 5' -60.2 NC_005337.1 + 133368 0.71 0.438008
Target:  5'- cCGCCGCCGCGCucGUcgcGCUcGGGCuccuGCUcGGc -3'
miRNA:   3'- -GCGGCGGCGUG--CA---CGA-CCCGu---UGA-CC- -5'
25695 5' -60.2 NC_005337.1 + 99657 0.72 0.355375
Target:  5'- gGCauCGCCGCGCG-GCUGGGCGcGCccgUGGc -3'
miRNA:   3'- gCG--GCGGCGUGCaCGACCCGU-UG---ACC- -5'
25695 5' -60.2 NC_005337.1 + 68479 0.72 0.355375
Target:  5'- aCGCCGCCGCaccgggcgccGCGcUGCU-GGCGGCcgUGGg -3'
miRNA:   3'- -GCGGCGGCG----------UGC-ACGAcCCGUUG--ACC- -5'
25695 5' -60.2 NC_005337.1 + 77425 0.73 0.317667
Target:  5'- gGCCcagcgagGCC-CGCGUGgaGGGCAugUGGa -3'
miRNA:   3'- gCGG-------CGGcGUGCACgaCCCGUugACC- -5'
25695 5' -60.2 NC_005337.1 + 88036 0.8 0.109413
Target:  5'- uGCCGgCGCACGUGCacgGGGUcguGCUGGa -3'
miRNA:   3'- gCGGCgGCGUGCACGa--CCCGu--UGACC- -5'
25695 5' -60.2 NC_005337.1 + 66761 0.79 0.14467
Target:  5'- -aCCGCCGCACGcGC-GGGCcGCUGGg -3'
miRNA:   3'- gcGGCGGCGUGCaCGaCCCGuUGACC- -5'
25695 5' -60.2 NC_005337.1 + 123813 0.78 0.159888
Target:  5'- gCGCCGCC-CACGUGUuccUGGGCGGCUc- -3'
miRNA:   3'- -GCGGCGGcGUGCACG---ACCCGUUGAcc -5'
25695 5' -60.2 NC_005337.1 + 3478 0.76 0.214495
Target:  5'- uCGUCGCgacUGCGCGUGCUGGuGCAGgaGGu -3'
miRNA:   3'- -GCGGCG---GCGUGCACGACC-CGUUgaCC- -5'
25695 5' -60.2 NC_005337.1 + 49450 0.75 0.230447
Target:  5'- gGCCGCgUGCGCGaUGCUGGcGUuGCUGGc -3'
miRNA:   3'- gCGGCG-GCGUGC-ACGACC-CGuUGACC- -5'
25695 5' -60.2 NC_005337.1 + 118456 0.75 0.241629
Target:  5'- aGCCGaCCuCugGUGCUGGGagacGCUGGg -3'
miRNA:   3'- gCGGC-GGcGugCACGACCCgu--UGACC- -5'
25695 5' -60.2 NC_005337.1 + 121730 0.74 0.271565
Target:  5'- aCGCCGCUGCACGUGCacucGGcCAGCUcacGGu -3'
miRNA:   3'- -GCGGCGGCGUGCACGac--CC-GUUGA---CC- -5'
25695 5' -60.2 NC_005337.1 + 69016 0.74 0.295585
Target:  5'- cCGCCGCCGUgucccggaugacugGCGUGCaGGGguACgccgGGu -3'
miRNA:   3'- -GCGGCGGCG--------------UGCACGaCCCguUGa---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.