miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25695 5' -60.2 NC_005337.1 + 28948 1.11 0.000822
Target:  5'- cCGCCGCCGCACGUGCUGGGCAACUGGg -3'
miRNA:   3'- -GCGGCGGCGUGCACGACCCGUUGACC- -5'
25695 5' -60.2 NC_005337.1 + 129784 0.81 0.103935
Target:  5'- aCGCCGCUGCACGUGCU-GGCGAUg-- -3'
miRNA:   3'- -GCGGCGGCGUGCACGAcCCGUUGacc -5'
25695 5' -60.2 NC_005337.1 + 88036 0.8 0.109413
Target:  5'- uGCCGgCGCACGUGCacgGGGUcguGCUGGa -3'
miRNA:   3'- gCGGCgGCGUGCACGa--CCCGu--UGACC- -5'
25695 5' -60.2 NC_005337.1 + 66761 0.79 0.14467
Target:  5'- -aCCGCCGCACGcGC-GGGCcGCUGGg -3'
miRNA:   3'- gcGGCGGCGUGCaCGaCCCGuUGACC- -5'
25695 5' -60.2 NC_005337.1 + 123813 0.78 0.159888
Target:  5'- gCGCCGCC-CACGUGUuccUGGGCGGCUc- -3'
miRNA:   3'- -GCGGCGGcGUGCACG---ACCCGUUGAcc -5'
25695 5' -60.2 NC_005337.1 + 43365 0.76 0.203407
Target:  5'- aCGCCGCUGCGCGUGUgcuucuacccccGGGCGG-UGGg -3'
miRNA:   3'- -GCGGCGGCGUGCACGa-----------CCCGUUgACC- -5'
25695 5' -60.2 NC_005337.1 + 75779 0.76 0.209392
Target:  5'- cCGCCGCuCGUuaaGC-UGCUGGaGCGGCUGGa -3'
miRNA:   3'- -GCGGCG-GCG---UGcACGACC-CGUUGACC- -5'
25695 5' -60.2 NC_005337.1 + 3478 0.76 0.214495
Target:  5'- uCGUCGCgacUGCGCGUGCUGGuGCAGgaGGu -3'
miRNA:   3'- -GCGGCG---GCGUGCACGACC-CGUUgaCC- -5'
25695 5' -60.2 NC_005337.1 + 49450 0.75 0.230447
Target:  5'- gGCCGCgUGCGCGaUGCUGGcGUuGCUGGc -3'
miRNA:   3'- gCGGCG-GCGUGC-ACGACC-CGuUGACC- -5'
25695 5' -60.2 NC_005337.1 + 104748 0.75 0.235983
Target:  5'- gGCCGCCGCGCGaagaccgccgUGCUGGagaaGCucCUGGa -3'
miRNA:   3'- gCGGCGGCGUGC----------ACGACC----CGuuGACC- -5'
25695 5' -60.2 NC_005337.1 + 37216 0.75 0.235983
Target:  5'- cCGCgCGCCGCGCGUGC-GuGGCGAUgaggUGGc -3'
miRNA:   3'- -GCG-GCGGCGUGCACGaC-CCGUUG----ACC- -5'
25695 5' -60.2 NC_005337.1 + 118456 0.75 0.241629
Target:  5'- aGCCGaCCuCugGUGCUGGGagacGCUGGg -3'
miRNA:   3'- gCGGC-GGcGugCACGACCCgu--UGACC- -5'
25695 5' -60.2 NC_005337.1 + 63618 0.75 0.259246
Target:  5'- aGCaCGCCGUugGUGaaGGGCAGCUu- -3'
miRNA:   3'- gCG-GCGGCGugCACgaCCCGUUGAcc -5'
25695 5' -60.2 NC_005337.1 + 121730 0.74 0.271565
Target:  5'- aCGCCGCUGCACGUGCacucGGcCAGCUcacGGu -3'
miRNA:   3'- -GCGGCGGCGUGCACGac--CC-GUUGA---CC- -5'
25695 5' -60.2 NC_005337.1 + 127232 0.74 0.284349
Target:  5'- cCGCCGcCCGCcccgACGUGCUcGGCcugauGCUGGa -3'
miRNA:   3'- -GCGGC-GGCG----UGCACGAcCCGu----UGACC- -5'
25695 5' -60.2 NC_005337.1 + 69016 0.74 0.295585
Target:  5'- cCGCCGCCGUgucccggaugacugGCGUGCaGGGguACgccgGGu -3'
miRNA:   3'- -GCGGCGGCG--------------UGCACGaCCCguUGa---CC- -5'
25695 5' -60.2 NC_005337.1 + 77425 0.73 0.317667
Target:  5'- gGCCcagcgagGCC-CGCGUGgaGGGCAugUGGa -3'
miRNA:   3'- gCGG-------CGGcGUGCACgaCCCGUugACC- -5'
25695 5' -60.2 NC_005337.1 + 107153 0.73 0.325539
Target:  5'- aCGCUGCUGCGCGUgGCcaaGcGGCuGCUGGa -3'
miRNA:   3'- -GCGGCGGCGUGCA-CGa--C-CCGuUGACC- -5'
25695 5' -60.2 NC_005337.1 + 37945 0.73 0.339475
Target:  5'- uGCCGCUGC-CGUGCcucgucgUGGGguACUGc -3'
miRNA:   3'- gCGGCGGCGuGCACG-------ACCCguUGACc -5'
25695 5' -60.2 NC_005337.1 + 55729 0.72 0.347739
Target:  5'- cCGCUGCUGUACGUGCcccGGCAGaUGGu -3'
miRNA:   3'- -GCGGCGGCGUGCACGac-CCGUUgACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.