miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25701 3' -62.9 NC_005337.1 + 38593 0.69 0.409178
Target:  5'- aGGCgUGGCGCgagCGCaGCGuGGGCGUGcUGg -3'
miRNA:   3'- -CCG-GCCGCGa--GUG-CGU-CCCGCACcAC- -5'
25701 3' -62.9 NC_005337.1 + 39636 0.67 0.496361
Target:  5'- gGGCCauguacacgcagcGGCGCggcCGCGUGGGGCGcgUGGc- -3'
miRNA:   3'- -CCGG-------------CCGCGa--GUGCGUCCCGC--ACCac -5'
25701 3' -62.9 NC_005337.1 + 39945 0.69 0.417552
Target:  5'- cGGCgGGCGcCUCGCGC-GGGCGc---- -3'
miRNA:   3'- -CCGgCCGC-GAGUGCGuCCCGCaccac -5'
25701 3' -62.9 NC_005337.1 + 48415 0.66 0.544432
Target:  5'- cGCuCGGCGUacUgGCGCuGuGCGUGGUGu -3'
miRNA:   3'- cCG-GCCGCG--AgUGCGuCcCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 49236 0.7 0.346106
Target:  5'- uGGCCGGCGaguaCUCGaccCGCgAGGGCucgcUGGUGg -3'
miRNA:   3'- -CCGGCCGC----GAGU---GCG-UCCCGc---ACCAC- -5'
25701 3' -62.9 NC_005337.1 + 50380 0.66 0.563708
Target:  5'- gGGCacgGGCGcCUgGCGCGGGggcgcgccgcGCGUcGGUGa -3'
miRNA:   3'- -CCGg--CCGC-GAgUGCGUCC----------CGCA-CCAC- -5'
25701 3' -62.9 NC_005337.1 + 54288 0.72 0.259165
Target:  5'- uGCC-GCaGUacaucacCACGCAGGGCGUGGUGg -3'
miRNA:   3'- cCGGcCG-CGa------GUGCGUCCCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 56303 0.67 0.497286
Target:  5'- cGGCCGcUGCUCGagaucuCGCAGGaGCGcuucgUGGUGc -3'
miRNA:   3'- -CCGGCcGCGAGU------GCGUCC-CGC-----ACCAC- -5'
25701 3' -62.9 NC_005337.1 + 57266 0.66 0.544432
Target:  5'- gGGCaCGGgGC-CGCGCGGGGCc-GGc- -3'
miRNA:   3'- -CCG-GCCgCGaGUGCGUCCCGcaCCac -5'
25701 3' -62.9 NC_005337.1 + 57657 0.68 0.469891
Target:  5'- uGCCgGGCGC-CGCGaacaAGGGCaaGGUGa -3'
miRNA:   3'- cCGG-CCGCGaGUGCg---UCCCGcaCCAC- -5'
25701 3' -62.9 NC_005337.1 + 59785 0.7 0.353598
Target:  5'- aGCCGGCGCcggCACGCGaccacGaGGCcgucgGUGGUGg -3'
miRNA:   3'- cCGGCCGCGa--GUGCGU-----C-CCG-----CACCAC- -5'
25701 3' -62.9 NC_005337.1 + 60270 0.69 0.40091
Target:  5'- aGUCGGgGCagGCGCGGGG-GUGGg- -3'
miRNA:   3'- cCGGCCgCGagUGCGUCCCgCACCac -5'
25701 3' -62.9 NC_005337.1 + 60883 0.67 0.525376
Target:  5'- cGuCCGGCGUUU-CGUcGGGCGUGuGUGc -3'
miRNA:   3'- cC-GGCCGCGAGuGCGuCCCGCAC-CAC- -5'
25701 3' -62.9 NC_005337.1 + 65397 0.67 0.525376
Target:  5'- uGGCCagcuGCGCgaagauguucUCcgGCGCGGGGC-UGGUGg -3'
miRNA:   3'- -CCGGc---CGCG----------AG--UGCGUCCCGcACCAC- -5'
25701 3' -62.9 NC_005337.1 + 65530 0.67 0.515942
Target:  5'- cGGCCGGUGCUggaggcgcacugUGCGCAgcacGGGCGUcucGGc- -3'
miRNA:   3'- -CCGGCCGCGA------------GUGCGU----CCCGCA---CCac -5'
25701 3' -62.9 NC_005337.1 + 69942 0.71 0.317287
Target:  5'- cGCCgcGGCGC-CACGCuccGCGUGGUGg -3'
miRNA:   3'- cCGG--CCGCGaGUGCGuccCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 72591 0.71 0.309685
Target:  5'- -aCCGaCGCcuccgggUCGCGCGcGGGCGUGGUGg -3'
miRNA:   3'- ccGGCcGCG-------AGUGCGU-CCCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 80508 0.66 0.554045
Target:  5'- cGGCCGGgGgCgggCACGCcgaggcccGGGGCGcGGa- -3'
miRNA:   3'- -CCGGCCgC-Ga--GUGCG--------UCCCGCaCCac -5'
25701 3' -62.9 NC_005337.1 + 84568 0.7 0.361204
Target:  5'- -aCCGGCGCgccgaGCcCGGGGCGcUGGUGu -3'
miRNA:   3'- ccGGCCGCGag---UGcGUCCCGC-ACCAC- -5'
25701 3' -62.9 NC_005337.1 + 88071 0.73 0.230799
Target:  5'- cGUCGGCgaGCUCAUGCAGGcCGUGGa- -3'
miRNA:   3'- cCGGCCG--CGAGUGCGUCCcGCACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.