miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25701 3' -62.9 NC_005337.1 + 984 0.75 0.161077
Target:  5'- gGGCUGGCGCggcgCGCGgAGGGCG-GGc- -3'
miRNA:   3'- -CCGGCCGCGa---GUGCgUCCCGCaCCac -5'
25701 3' -62.9 NC_005337.1 + 984 0.75 0.161077
Target:  5'- gGGCUGGCGCggcgCGCGgAGGGCG-GGc- -3'
miRNA:   3'- -CCGGCCGCGa---GUGCgUCCCGCaCCac -5'
25701 3' -62.9 NC_005337.1 + 3126 0.67 0.515942
Target:  5'- cGGCCGGC-CUCGCGUccAGcGCGcGGUc -3'
miRNA:   3'- -CCGGCCGcGAGUGCG--UCcCGCaCCAc -5'
25701 3' -62.9 NC_005337.1 + 6024 0.66 0.554045
Target:  5'- gGGCgGGCGC-CA-GCAGGGcCGUGc-- -3'
miRNA:   3'- -CCGgCCGCGaGUgCGUCCC-GCACcac -5'
25701 3' -62.9 NC_005337.1 + 9799 0.68 0.469891
Target:  5'- aGGgCGGCGUUCACcaugucCAGGGCGgaUGaGUGc -3'
miRNA:   3'- -CCgGCCGCGAGUGc-----GUCCCGC--AC-CAC- -5'
25701 3' -62.9 NC_005337.1 + 10326 0.66 0.554045
Target:  5'- uGCa-GCGCgaccggCuCGCGGGGCGUGGg- -3'
miRNA:   3'- cCGgcCGCGa-----GuGCGUCCCGCACCac -5'
25701 3' -62.9 NC_005337.1 + 10830 0.66 0.544432
Target:  5'- uGCUGGCGCUgcggCGCGgAGGGCGa---- -3'
miRNA:   3'- cCGGCCGCGA----GUGCgUCCCGCaccac -5'
25701 3' -62.9 NC_005337.1 + 10970 0.69 0.392748
Target:  5'- uGGCCGGCGgaucCGCGCAGcGCGUGcGg- -3'
miRNA:   3'- -CCGGCCGCga--GUGCGUCcCGCAC-Cac -5'
25701 3' -62.9 NC_005337.1 + 18063 0.66 0.563708
Target:  5'- cGCaaacugGGCGCaCACGCgcuggcagAGGaGCGUGGUGu -3'
miRNA:   3'- cCGg-----CCGCGaGUGCG--------UCC-CGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 19339 0.66 0.582183
Target:  5'- uGGCCaGCaGCUcCGCGUggcucAGGGCGUccauguugagguaGGUGg -3'
miRNA:   3'- -CCGGcCG-CGA-GUGCG-----UCCCGCA-------------CCAC- -5'
25701 3' -62.9 NC_005337.1 + 19626 0.68 0.452062
Target:  5'- aGGCCcGCGUUCAC-CGGGGggauccCGUGGUc -3'
miRNA:   3'- -CCGGcCGCGAGUGcGUCCC------GCACCAc -5'
25701 3' -62.9 NC_005337.1 + 24283 1.08 0.000689
Target:  5'- uGGCCGGCGCUCACGCAGGGCGUGGUGc -3'
miRNA:   3'- -CCGGCCGCGAGUGCGUCCCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 25689 0.68 0.434609
Target:  5'- aGG-CGGCG-UCGCGCAGGaGCG-GGUu -3'
miRNA:   3'- -CCgGCCGCgAGUGCGUCC-CGCaCCAc -5'
25701 3' -62.9 NC_005337.1 + 28246 0.66 0.544432
Target:  5'- cGCCGucGCGCggcaccaCGCGCAcGuGCGUGGUGu -3'
miRNA:   3'- cCGGC--CGCGa------GUGCGUcC-CGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 28492 0.69 0.40091
Target:  5'- cGGCCgcgcGGCGCgcggUCGCGCGGcacuGCGUGGg- -3'
miRNA:   3'- -CCGG----CCGCG----AGUGCGUCc---CGCACCac -5'
25701 3' -62.9 NC_005337.1 + 30083 0.71 0.296884
Target:  5'- uGGCgCGGCGCUCGCGCAcGGUGa---- -3'
miRNA:   3'- -CCG-GCCGCGAGUGCGUcCCGCaccac -5'
25701 3' -62.9 NC_005337.1 + 32374 0.66 0.583159
Target:  5'- aGCCGGUGCUUcaGCAuGGaGUGGUGc -3'
miRNA:   3'- cCGGCCGCGAGugCGUcCCgCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 33597 0.71 0.30357
Target:  5'- cGGCCGcGCGCgcggCGCGaacGcGGCGUGGUu -3'
miRNA:   3'- -CCGGC-CGCGa---GUGCgu-C-CCGCACCAc -5'
25701 3' -62.9 NC_005337.1 + 35699 0.7 0.368923
Target:  5'- cGGCUGGCgagcgcggGCUCcgucuaccgguGCGUGGacGGCGUGGUGg -3'
miRNA:   3'- -CCGGCCG--------CGAG-----------UGCGUC--CCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 38337 0.7 0.35891
Target:  5'- cGCCGggcgaguacgcgcuGCGCaUCACGCAcacgacGGGCGUGGa- -3'
miRNA:   3'- cCGGC--------------CGCG-AGUGCGU------CCCGCACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.