miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25701 3' -62.9 NC_005337.1 + 60883 0.67 0.525376
Target:  5'- cGuCCGGCGUUU-CGUcGGGCGUGuGUGc -3'
miRNA:   3'- cC-GGCCGCGAGuGCGuCCCGCAC-CAC- -5'
25701 3' -62.9 NC_005337.1 + 89959 0.68 0.443287
Target:  5'- cGUCGGCgaucucguugcuGCUCACGCAGGacuCGUcGGUGc -3'
miRNA:   3'- cCGGCCG------------CGAGUGCGUCCc--GCA-CCAC- -5'
25701 3' -62.9 NC_005337.1 + 133696 0.68 0.443287
Target:  5'- cGCCGGCgGCUucCGCGCGGccgcGGCGUacgcgcggcGGUGg -3'
miRNA:   3'- cCGGCCG-CGA--GUGCGUC----CCGCA---------CCAC- -5'
25701 3' -62.9 NC_005337.1 + 19626 0.68 0.452062
Target:  5'- aGGCCcGCGUUCAC-CGGGGggauccCGUGGUc -3'
miRNA:   3'- -CCGGcCGCGAGUGcGUCCC------GCACCAc -5'
25701 3' -62.9 NC_005337.1 + 9799 0.68 0.469891
Target:  5'- aGGgCGGCGUUCACcaugucCAGGGCGgaUGaGUGc -3'
miRNA:   3'- -CCgGCCGCGAGUGc-----GUCCCGC--AC-CAC- -5'
25701 3' -62.9 NC_005337.1 + 57657 0.68 0.469891
Target:  5'- uGCCgGGCGC-CGCGaacaAGGGCaaGGUGa -3'
miRNA:   3'- cCGG-CCGCGaGUGCg---UCCCGcaCCAC- -5'
25701 3' -62.9 NC_005337.1 + 39636 0.67 0.496361
Target:  5'- gGGCCauguacacgcagcGGCGCggcCGCGUGGGGCGcgUGGc- -3'
miRNA:   3'- -CCGG-------------CCGCGa--GUGCGUCCCGC--ACCac -5'
25701 3' -62.9 NC_005337.1 + 96276 0.67 0.497286
Target:  5'- uGCCGGCGUUC-C-CGGcGGCGUuggGGUGc -3'
miRNA:   3'- cCGGCCGCGAGuGcGUC-CCGCA---CCAC- -5'
25701 3' -62.9 NC_005337.1 + 3126 0.67 0.515942
Target:  5'- cGGCCGGC-CUCGCGUccAGcGCGcGGUc -3'
miRNA:   3'- -CCGGCCGcGAGUGCG--UCcCGCaCCAc -5'
25701 3' -62.9 NC_005337.1 + 25689 0.68 0.434609
Target:  5'- aGG-CGGCG-UCGCGCAGGaGCG-GGUu -3'
miRNA:   3'- -CCgGCCGCgAGUGCGUCC-CGCaCCAc -5'
25701 3' -62.9 NC_005337.1 + 39945 0.69 0.417552
Target:  5'- cGGCgGGCGcCUCGCGC-GGGCGc---- -3'
miRNA:   3'- -CCGgCCGC-GAGUGCGuCCCGCaccac -5'
25701 3' -62.9 NC_005337.1 + 38593 0.69 0.409178
Target:  5'- aGGCgUGGCGCgagCGCaGCGuGGGCGUGcUGg -3'
miRNA:   3'- -CCG-GCCGCGa--GUG-CGU-CCCGCACcAC- -5'
25701 3' -62.9 NC_005337.1 + 99400 0.74 0.195531
Target:  5'- uGCCGGUGCU-GCGCAccgcGGGCGgcgGGUGc -3'
miRNA:   3'- cCGGCCGCGAgUGCGU----CCCGCa--CCAC- -5'
25701 3' -62.9 NC_005337.1 + 97997 0.73 0.225451
Target:  5'- uGGCC-GCGUUCGCGCAGcGGC-UGGUc -3'
miRNA:   3'- -CCGGcCGCGAGUGCGUC-CCGcACCAc -5'
25701 3' -62.9 NC_005337.1 + 121794 0.72 0.253272
Target:  5'- cGCCGGUGCggACGCGGaGGCGcUGGa- -3'
miRNA:   3'- cCGGCCGCGagUGCGUC-CCGC-ACCac -5'
25701 3' -62.9 NC_005337.1 + 69942 0.71 0.317287
Target:  5'- cGCCgcGGCGC-CACGCuccGCGUGGUGg -3'
miRNA:   3'- cCGG--CCGCGaGUGCGuccCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 127962 0.71 0.324319
Target:  5'- uGGCC-GCGCUCAUGCgcuccaagAGGGCGaGuGUGg -3'
miRNA:   3'- -CCGGcCGCGAGUGCG--------UCCCGCaC-CAC- -5'
25701 3' -62.9 NC_005337.1 + 95299 0.7 0.361204
Target:  5'- cGGCCGGUGacgCACGCGcacucGGGCGccgaucGGUGc -3'
miRNA:   3'- -CCGGCCGCga-GUGCGU-----CCCGCa-----CCAC- -5'
25701 3' -62.9 NC_005337.1 + 60270 0.69 0.40091
Target:  5'- aGUCGGgGCagGCGCGGGG-GUGGg- -3'
miRNA:   3'- cCGGCCgCGagUGCGUCCCgCACCac -5'
25701 3' -62.9 NC_005337.1 + 28492 0.69 0.40091
Target:  5'- cGGCCgcgcGGCGCgcggUCGCGCGGcacuGCGUGGg- -3'
miRNA:   3'- -CCGG----CCGCG----AGUGCGUCc---CGCACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.