miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25701 3' -62.9 NC_005337.1 + 24283 1.08 0.000689
Target:  5'- uGGCCGGCGCUCACGCAGGGCGUGGUGc -3'
miRNA:   3'- -CCGGCCGCGAGUGCGUCCCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 984 0.75 0.161077
Target:  5'- gGGCUGGCGCggcgCGCGgAGGGCG-GGc- -3'
miRNA:   3'- -CCGGCCGCGa---GUGCgUCCCGCaCCac -5'
25701 3' -62.9 NC_005337.1 + 984 0.75 0.161077
Target:  5'- gGGCUGGCGCggcgCGCGgAGGGCG-GGc- -3'
miRNA:   3'- -CCGGCCGCGa---GUGCgUCCCGCaCCac -5'
25701 3' -62.9 NC_005337.1 + 99400 0.74 0.195531
Target:  5'- uGCCGGUGCU-GCGCAccgcGGGCGgcgGGUGc -3'
miRNA:   3'- cCGGCCGCGAgUGCGU----CCCGCa--CCAC- -5'
25701 3' -62.9 NC_005337.1 + 97997 0.73 0.225451
Target:  5'- uGGCC-GCGUUCGCGCAGcGGC-UGGUc -3'
miRNA:   3'- -CCGGcCGCGAGUGCGUC-CCGcACCAc -5'
25701 3' -62.9 NC_005337.1 + 88071 0.73 0.230799
Target:  5'- cGUCGGCgaGCUCAUGCAGGcCGUGGa- -3'
miRNA:   3'- cCGGCCG--CGAGUGCGUCCcGCACCac -5'
25701 3' -62.9 NC_005337.1 + 121794 0.72 0.253272
Target:  5'- cGCCGGUGCggACGCGGaGGCGcUGGa- -3'
miRNA:   3'- cCGGCCGCGagUGCGUC-CCGC-ACCac -5'
25701 3' -62.9 NC_005337.1 + 54288 0.72 0.259165
Target:  5'- uGCC-GCaGUacaucacCACGCAGGGCGUGGUGg -3'
miRNA:   3'- cCGGcCG-CGa------GUGCGUCCCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 30083 0.71 0.296884
Target:  5'- uGGCgCGGCGCUCGCGCAcGGUGa---- -3'
miRNA:   3'- -CCG-GCCGCGAGUGCGUcCCGCaccac -5'
25701 3' -62.9 NC_005337.1 + 33597 0.71 0.30357
Target:  5'- cGGCCGcGCGCgcggCGCGaacGcGGCGUGGUu -3'
miRNA:   3'- -CCGGC-CGCGa---GUGCgu-C-CCGCACCAc -5'
25701 3' -62.9 NC_005337.1 + 72591 0.71 0.309685
Target:  5'- -aCCGaCGCcuccgggUCGCGCGcGGGCGUGGUGg -3'
miRNA:   3'- ccGGCcGCG-------AGUGCGU-CCCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 69942 0.71 0.317287
Target:  5'- cGCCgcGGCGC-CACGCuccGCGUGGUGg -3'
miRNA:   3'- cCGG--CCGCGaGUGCGuccCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 127962 0.71 0.324319
Target:  5'- uGGCC-GCGCUCAUGCgcuccaagAGGGCGaGuGUGg -3'
miRNA:   3'- -CCGGcCGCGAGUGCG--------UCCCGCaC-CAC- -5'
25701 3' -62.9 NC_005337.1 + 49236 0.7 0.346106
Target:  5'- uGGCCGGCGaguaCUCGaccCGCgAGGGCucgcUGGUGg -3'
miRNA:   3'- -CCGGCCGC----GAGU---GCG-UCCCGc---ACCAC- -5'
25701 3' -62.9 NC_005337.1 + 59785 0.7 0.353598
Target:  5'- aGCCGGCGCcggCACGCGaccacGaGGCcgucgGUGGUGg -3'
miRNA:   3'- cCGGCCGCGa--GUGCGU-----C-CCG-----CACCAC- -5'
25701 3' -62.9 NC_005337.1 + 38337 0.7 0.35891
Target:  5'- cGCCGggcgaguacgcgcuGCGCaUCACGCAcacgacGGGCGUGGa- -3'
miRNA:   3'- cCGGC--------------CGCG-AGUGCGU------CCCGCACCac -5'
25701 3' -62.9 NC_005337.1 + 95299 0.7 0.361204
Target:  5'- cGGCCGGUGacgCACGCGcacucGGGCGccgaucGGUGc -3'
miRNA:   3'- -CCGGCCGCga-GUGCGU-----CCCGCa-----CCAC- -5'
25701 3' -62.9 NC_005337.1 + 84568 0.7 0.361204
Target:  5'- -aCCGGCGCgccgaGCcCGGGGCGcUGGUGu -3'
miRNA:   3'- ccGGCCGCGag---UGcGUCCCGC-ACCAC- -5'
25701 3' -62.9 NC_005337.1 + 35699 0.7 0.368923
Target:  5'- cGGCUGGCgagcgcggGCUCcgucuaccgguGCGUGGacGGCGUGGUGg -3'
miRNA:   3'- -CCGGCCG--------CGAG-----------UGCGUC--CCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 109003 0.7 0.368923
Target:  5'- uGGCCGaggaGgGCUCGCGgAacguGGGCGUGGa- -3'
miRNA:   3'- -CCGGC----CgCGAGUGCgU----CCCGCACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.