miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 5' -53.1 NC_005337.1 + 4070 0.68 0.919511
Target:  5'- cGAUCuccGUCUCGCACuccagGaUGAGCuCCGCg -3'
miRNA:   3'- -CUAG---UAGAGCGUGca---CgACUUG-GGCG- -5'
25711 5' -53.1 NC_005337.1 + 14844 0.68 0.919511
Target:  5'- cGAUguUCUCGCGCGcGCUauccACCuCGCu -3'
miRNA:   3'- -CUAguAGAGCGUGCaCGAcu--UGG-GCG- -5'
25711 5' -53.1 NC_005337.1 + 80410 0.68 0.913585
Target:  5'- uGUCugCUCGCggugGCGUcGCUGGucguGCCCGCg -3'
miRNA:   3'- cUAGuaGAGCG----UGCA-CGACU----UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 92402 0.68 0.913585
Target:  5'- --aCGUCggGgACGUGCUGgGGCUCGCg -3'
miRNA:   3'- cuaGUAGagCgUGCACGAC-UUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 73434 0.68 0.907408
Target:  5'- aGAUCAUgagCgacaCGCGCGUGCUc-AUCCGCg -3'
miRNA:   3'- -CUAGUA---Ga---GCGUGCACGAcuUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 25359 0.68 0.907408
Target:  5'- gGcgCGUCUCGCugGUGCccuUGcucacgcGCUCGCu -3'
miRNA:   3'- -CuaGUAGAGCGugCACG---ACu------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 73495 0.68 0.907408
Target:  5'- -cUCGUCgcggUCGUgaagGCgGUGCUGGgcACCCGCg -3'
miRNA:   3'- cuAGUAG----AGCG----UG-CACGACU--UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 73540 0.68 0.907408
Target:  5'- cAUCAUCUCGCugGc---GAGCCUGUu -3'
miRNA:   3'- cUAGUAGAGCGugCacgaCUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 133149 0.68 0.900981
Target:  5'- -cUgGUCgCGCGCGUGCUGcGgCUGCu -3'
miRNA:   3'- cuAgUAGaGCGUGCACGACuUgGGCG- -5'
25711 5' -53.1 NC_005337.1 + 133149 0.68 0.900981
Target:  5'- -cUgGUCgCGCGCGUGCUGcGgCUGCu -3'
miRNA:   3'- cuAgUAGaGCGUGCACGACuUgGGCG- -5'
25711 5' -53.1 NC_005337.1 + 72938 0.68 0.89431
Target:  5'- -uUCAUCguggCGCuggucauCGUGCUGAACagcagCGCg -3'
miRNA:   3'- cuAGUAGa---GCGu------GCACGACUUGg----GCG- -5'
25711 5' -53.1 NC_005337.1 + 74806 0.68 0.89431
Target:  5'- -uUCAUCcuggCGUACcUGCUGGugCUGCu -3'
miRNA:   3'- cuAGUAGa---GCGUGcACGACUugGGCG- -5'
25711 5' -53.1 NC_005337.1 + 79051 0.68 0.89431
Target:  5'- ----uUCUUGCGCGUGCUGAAgaCCa- -3'
miRNA:   3'- cuaguAGAGCGUGCACGACUUg-GGcg -5'
25711 5' -53.1 NC_005337.1 + 122717 0.68 0.89431
Target:  5'- uGGUCcgCgugcugUCGCACGUGCccgcgGAcgACCUGCg -3'
miRNA:   3'- -CUAGuaG------AGCGUGCACGa----CU--UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 122914 0.69 0.887396
Target:  5'- cGAgcgCG-CUCgaggGCGCGaUGCUGAACCCGg -3'
miRNA:   3'- -CUa--GUaGAG----CGUGC-ACGACUUGGGCg -5'
25711 5' -53.1 NC_005337.1 + 75428 0.69 0.887396
Target:  5'- cGUCAUCUCGUGgcUGUUGAG-CCGCa -3'
miRNA:   3'- cUAGUAGAGCGUgcACGACUUgGGCG- -5'
25711 5' -53.1 NC_005337.1 + 9633 0.69 0.887396
Target:  5'- -cUCGacCUCGCagagcGCGaUGCUGAgcaGCCCGCg -3'
miRNA:   3'- cuAGUa-GAGCG-----UGC-ACGACU---UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 70510 0.69 0.887396
Target:  5'- uGAUCAcCaaGCuCGUGCUGGACgUGCg -3'
miRNA:   3'- -CUAGUaGagCGuGCACGACUUGgGCG- -5'
25711 5' -53.1 NC_005337.1 + 6894 0.69 0.887396
Target:  5'- --cCAUgUCGCGCGcGCgcGggUCCGCg -3'
miRNA:   3'- cuaGUAgAGCGUGCaCGa-CuuGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 77955 0.69 0.880243
Target:  5'- --gCGUCUCGCGCaUGUacucguUGAucuCCCGCa -3'
miRNA:   3'- cuaGUAGAGCGUGcACG------ACUu--GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.