miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 5' -53.1 NC_005337.1 + 33632 0.7 0.815151
Target:  5'- cGAUgugCUUGguCGUGCUGAugUCGCa -3'
miRNA:   3'- -CUAguaGAGCguGCACGACUugGGCG- -5'
25711 5' -53.1 NC_005337.1 + 35107 0.74 0.603825
Target:  5'- cGGUCuUCUUGCugGUGUggaucuUGAACUCGCc -3'
miRNA:   3'- -CUAGuAGAGCGugCACG------ACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 38060 0.7 0.832641
Target:  5'- cAUCGUCUCcCACGUGaCcGggUCCGUg -3'
miRNA:   3'- cUAGUAGAGcGUGCAC-GaCuuGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 40717 0.67 0.935777
Target:  5'- gGAUUccCUCGUggGUGCgccGGACUCGCg -3'
miRNA:   3'- -CUAGuaGAGCGugCACGa--CUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 41691 0.66 0.953957
Target:  5'- cGUCGUCgaaGCACGUcCgGAGCCgGCc -3'
miRNA:   3'- cUAGUAGag-CGUGCAcGaCUUGGgCG- -5'
25711 5' -53.1 NC_005337.1 + 42737 0.75 0.559016
Target:  5'- --aCAUC-CGCGCGcUGCUGAccgacgccucucgcGCCCGCu -3'
miRNA:   3'- cuaGUAGaGCGUGC-ACGACU--------------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 44304 0.66 0.953957
Target:  5'- gGcgCcgCUCccccgaGCGCGUGCUGcGgCCGCg -3'
miRNA:   3'- -CuaGuaGAG------CGUGCACGACuUgGGCG- -5'
25711 5' -53.1 NC_005337.1 + 45936 0.66 0.957891
Target:  5'- cGGUCuUCUCGCGCGcGCc-GGCgCGCg -3'
miRNA:   3'- -CUAGuAGAGCGUGCaCGacUUGgGCG- -5'
25711 5' -53.1 NC_005337.1 + 48142 0.67 0.930608
Target:  5'- aGAUgGcCUCGUACGUGgacGAGcCCCGCg -3'
miRNA:   3'- -CUAgUaGAGCGUGCACga-CUU-GGGCG- -5'
25711 5' -53.1 NC_005337.1 + 48271 0.73 0.687755
Target:  5'- --gCGUgaCGCACcugcgGCUGGACCCGCg -3'
miRNA:   3'- cuaGUAgaGCGUGca---CGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 50758 0.66 0.968295
Target:  5'- uGAUCG-CgggCGCacGCGUGCgGuuCCCGCg -3'
miRNA:   3'- -CUAGUaGa--GCG--UGCACGaCuuGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 51516 0.66 0.963002
Target:  5'- cGAUCAUCauggCGCucuucgGCGUGCggcugccgggccugGAGgCCGCg -3'
miRNA:   3'- -CUAGUAGa---GCG------UGCACGa-------------CUUgGGCG- -5'
25711 5' -53.1 NC_005337.1 + 52491 0.67 0.930608
Target:  5'- -cUCGUCggcgaGCugGUGUuccUGAACCgGCu -3'
miRNA:   3'- cuAGUAGag---CGugCACG---ACUUGGgCG- -5'
25711 5' -53.1 NC_005337.1 + 57065 0.7 0.832641
Target:  5'- -cUCAacccCUCGCGCGUGC-GGAUCaCGCg -3'
miRNA:   3'- cuAGUa---GAGCGUGCACGaCUUGG-GCG- -5'
25711 5' -53.1 NC_005337.1 + 58474 0.66 0.965055
Target:  5'- --aCGUCUCGC---UGCUGAcggaGCuCCGCg -3'
miRNA:   3'- cuaGUAGAGCGugcACGACU----UG-GGCG- -5'
25711 5' -53.1 NC_005337.1 + 58628 0.7 0.815151
Target:  5'- ---gAUCUCGCACGUGgaGuucuCCuCGCg -3'
miRNA:   3'- cuagUAGAGCGUGCACgaCuu--GG-GCG- -5'
25711 5' -53.1 NC_005337.1 + 58828 0.67 0.927385
Target:  5'- aGAUCGUCgggCGCGcCGUGCggcucaacagccacGAgaugacGCCCGCc -3'
miRNA:   3'- -CUAGUAGa--GCGU-GCACGa-------------CU------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 62100 0.78 0.424955
Target:  5'- ----uUCUCGUACuUGCUGAGCCCGUu -3'
miRNA:   3'- cuaguAGAGCGUGcACGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 63153 0.74 0.635365
Target:  5'- cGGUgCcgC-CGCccgaggACGUGCUGAGCCCGCc -3'
miRNA:   3'- -CUA-GuaGaGCG------UGCACGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 63984 0.66 0.968295
Target:  5'- uGGUgAUgUggUGCGCGUGCUuGugCCGCg -3'
miRNA:   3'- -CUAgUAgA--GCGUGCACGAcUugGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.