miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 5' -53.1 NC_005337.1 + 1944 0.7 0.8411
Target:  5'- cGGUCGUg-CGCAUGUcGCU--GCCCGCg -3'
miRNA:   3'- -CUAGUAgaGCGUGCA-CGAcuUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 3475 0.69 0.865244
Target:  5'- gGGUCGUCgcgacUGCGCGUGCUGGugCa-- -3'
miRNA:   3'- -CUAGUAGa----GCGUGCACGACUugGgcg -5'
25711 5' -53.1 NC_005337.1 + 4070 0.68 0.919511
Target:  5'- cGAUCuccGUCUCGCACuccagGaUGAGCuCCGCg -3'
miRNA:   3'- -CUAG---UAGAGCGUGca---CgACUUG-GGCG- -5'
25711 5' -53.1 NC_005337.1 + 6139 0.66 0.965055
Target:  5'- cGAgcgCGUUUCGCGCGUucacGCgGcAGCCgCGCa -3'
miRNA:   3'- -CUa--GUAGAGCGUGCA----CGaC-UUGG-GCG- -5'
25711 5' -53.1 NC_005337.1 + 6894 0.69 0.887396
Target:  5'- --cCAUgUCGCGCGcGCgcGggUCCGCg -3'
miRNA:   3'- cuaGUAgAGCGUGCaCGa-CuuGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 7091 0.66 0.957891
Target:  5'- cGGUCAUgUCGUACGcGUcaGACUCGCg -3'
miRNA:   3'- -CUAGUAgAGCGUGCaCGacUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 7994 0.67 0.935777
Target:  5'- cGAUUAUCU-GCGCGUGCgUGGcuaUCGCg -3'
miRNA:   3'- -CUAGUAGAgCGUGCACG-ACUug-GGCG- -5'
25711 5' -53.1 NC_005337.1 + 9633 0.69 0.887396
Target:  5'- -cUCGacCUCGCagagcGCGaUGCUGAgcaGCCCGCg -3'
miRNA:   3'- cuAGUa-GAGCG-----UGC-ACGACU---UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 12052 0.67 0.930608
Target:  5'- cGGUCGUCcggCGUGCGcGCcGAcacguccgcGCCCGCg -3'
miRNA:   3'- -CUAGUAGa--GCGUGCaCGaCU---------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 13001 0.67 0.930608
Target:  5'- ---uGUCUCGguCGUGCa-GGCCUGCg -3'
miRNA:   3'- cuagUAGAGCguGCACGacUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 14844 0.68 0.919511
Target:  5'- cGAUguUCUCGCGCGcGCUauccACCuCGCu -3'
miRNA:   3'- -CUAguAGAGCGUGCaCGAcu--UGG-GCG- -5'
25711 5' -53.1 NC_005337.1 + 16430 1.12 0.002781
Target:  5'- uGAUCAUCUCGCACGUGCUGAACCCGCg -3'
miRNA:   3'- -CUAGUAGAGCGUGCACGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 17101 0.7 0.849359
Target:  5'- --aUAUCUCGCGCGagUGCgcccggcaGAACUCGCc -3'
miRNA:   3'- cuaGUAGAGCGUGC--ACGa-------CUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 21479 0.7 0.815151
Target:  5'- aGAUC-UCUguaugcgcCGcCACGUgGCUGAGCUCGCg -3'
miRNA:   3'- -CUAGuAGA--------GC-GUGCA-CGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 24531 0.68 0.919511
Target:  5'- -----cCUCGCggACGUGCUGcGCaCCGCc -3'
miRNA:   3'- cuaguaGAGCG--UGCACGACuUG-GGCG- -5'
25711 5' -53.1 NC_005337.1 + 25359 0.68 0.907408
Target:  5'- gGcgCGUCUCGCugGUGCccuUGcucacgcGCUCGCu -3'
miRNA:   3'- -CuaGUAGAGCGugCACG---ACu------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 25421 0.73 0.698125
Target:  5'- -uUCcgCUCGCACGacgGCgUGucGCCCGCg -3'
miRNA:   3'- cuAGuaGAGCGUGCa--CG-ACu-UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 28174 0.66 0.960504
Target:  5'- aGGUgCGUC-CGCugGUGCccuaGAgcaugcccucguacGCCCGCg -3'
miRNA:   3'- -CUA-GUAGaGCGugCACGa---CU--------------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 29644 0.68 0.919511
Target:  5'- uGAUCAcgggCUCcgagauGCGCGUGCU---CCCGCg -3'
miRNA:   3'- -CUAGUa---GAG------CGUGCACGAcuuGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 30828 0.7 0.832641
Target:  5'- ---gAUCUCcauCACGUGCggGAACUCGCg -3'
miRNA:   3'- cuagUAGAGc--GUGCACGa-CUUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.