miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 5' -53.1 NC_005337.1 + 70510 0.69 0.887396
Target:  5'- uGAUCAcCaaGCuCGUGCUGGACgUGCg -3'
miRNA:   3'- -CUAGUaGagCGuGCACGACUUGgGCG- -5'
25711 5' -53.1 NC_005337.1 + 118225 0.7 0.8411
Target:  5'- cGUCAUCaUGCA-GUGCgcgGAGCCCGa -3'
miRNA:   3'- cUAGUAGaGCGUgCACGa--CUUGGGCg -5'
25711 5' -53.1 NC_005337.1 + 1944 0.7 0.8411
Target:  5'- cGGUCGUg-CGCAUGUcGCU--GCCCGCg -3'
miRNA:   3'- -CUAGUAgaGCGUGCA-CGAcuUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 99658 0.69 0.857409
Target:  5'- --gCAUCgcCGCGCG-GCUGGgcgcGCCCGUg -3'
miRNA:   3'- cuaGUAGa-GCGUGCaCGACU----UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 3475 0.69 0.865244
Target:  5'- gGGUCGUCgcgacUGCGCGUGCUGGugCa-- -3'
miRNA:   3'- -CUAGUAGa----GCGUGCACGACUugGgcg -5'
25711 5' -53.1 NC_005337.1 + 123617 0.69 0.872858
Target:  5'- --gCG-CUCGCGgGUGCUGAcGCUCGUg -3'
miRNA:   3'- cuaGUaGAGCGUgCACGACU-UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 83155 0.69 0.872858
Target:  5'- cGAUCAUCUCGCccuCccGCcGGAUCUGCa -3'
miRNA:   3'- -CUAGUAGAGCGu--GcaCGaCUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 9633 0.69 0.887396
Target:  5'- -cUCGacCUCGCagagcGCGaUGCUGAgcaGCCCGCg -3'
miRNA:   3'- cuAGUa-GAGCG-----UGC-ACGACU---UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 6894 0.69 0.887396
Target:  5'- --cCAUgUCGCGCGcGCgcGggUCCGCg -3'
miRNA:   3'- cuaGUAgAGCGUGCaCGa-CuuGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 57065 0.7 0.832641
Target:  5'- -cUCAacccCUCGCGCGUGC-GGAUCaCGCg -3'
miRNA:   3'- cuAGUa---GAGCGUGCACGaCUUGG-GCG- -5'
25711 5' -53.1 NC_005337.1 + 73257 0.7 0.815151
Target:  5'- cAUCGUCUCGCuggaggacuacaGCGUGgaGGACaucaaCGCg -3'
miRNA:   3'- cUAGUAGAGCG------------UGCACgaCUUGg----GCG- -5'
25711 5' -53.1 NC_005337.1 + 64404 0.71 0.79696
Target:  5'- uGGUCcaa-CGUGCGgucGCUGGACCCGCg -3'
miRNA:   3'- -CUAGuagaGCGUGCa--CGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 69151 0.77 0.481543
Target:  5'- aGcgCGUCUCGCGCGUGCUG---CUGCa -3'
miRNA:   3'- -CuaGUAGAGCGUGCACGACuugGGCG- -5'
25711 5' -53.1 NC_005337.1 + 88899 0.74 0.592299
Target:  5'- cGGUgGUCUCGCAgguggucaacacCGUGCUGAccgucgucugcgaGCUCGCg -3'
miRNA:   3'- -CUAgUAGAGCGU------------GCACGACU-------------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 35107 0.74 0.603825
Target:  5'- cGGUCuUCUUGCugGUGUggaucuUGAACUCGCc -3'
miRNA:   3'- -CUAGuAGAGCGugCACG------ACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 63153 0.74 0.635365
Target:  5'- cGGUgCcgC-CGCccgaggACGUGCUGAGCCCGCc -3'
miRNA:   3'- -CUA-GuaGaGCG------UGCACGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 109487 0.73 0.681509
Target:  5'- cGGUCGUCcagccacgCGUACGUGgUGAucaggaaggugagccGCCCGCg -3'
miRNA:   3'- -CUAGUAGa-------GCGUGCACgACU---------------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 48271 0.73 0.687755
Target:  5'- --gCGUgaCGCACcugcgGCUGGACCCGCg -3'
miRNA:   3'- cuaGUAgaGCGUGca---CGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 72639 0.71 0.758766
Target:  5'- --aCGUUUCcaugGCG-GUGCUGGGCCCGCu -3'
miRNA:   3'- cuaGUAGAG----CGUgCACGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 98119 0.71 0.768517
Target:  5'- ---gAUCUCGCAgCGgggugaGCaUGGACCCGCa -3'
miRNA:   3'- cuagUAGAGCGU-GCa-----CG-ACUUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.