miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 5' -53.1 NC_005337.1 + 16430 1.12 0.002781
Target:  5'- uGAUCAUCUCGCACGUGCUGAACCCGCg -3'
miRNA:   3'- -CUAGUAGAGCGUGCACGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 62100 0.78 0.424955
Target:  5'- ----uUCUCGUACuUGCUGAGCCCGUu -3'
miRNA:   3'- cuaguAGAGCGUGcACGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 103031 0.77 0.47185
Target:  5'- -cUCAUCUCGCAgcucucgGUGCUGAGCUCGa -3'
miRNA:   3'- cuAGUAGAGCGUg------CACGACUUGGGCg -5'
25711 5' -53.1 NC_005337.1 + 69151 0.77 0.481543
Target:  5'- aGcgCGUCUCGCGCGUGCUG---CUGCa -3'
miRNA:   3'- -CuaGUAGAGCGUGCACGACuugGGCG- -5'
25711 5' -53.1 NC_005337.1 + 100473 0.75 0.541542
Target:  5'- -cUCAUCUCGCugGacgaGCgGAGCUCGCu -3'
miRNA:   3'- cuAGUAGAGCGugCa---CGaCUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 42737 0.75 0.559016
Target:  5'- --aCAUC-CGCGCGcUGCUGAccgacgccucucgcGCCCGCu -3'
miRNA:   3'- cuaGUAGaGCGUGC-ACGACU--------------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 88899 0.74 0.592299
Target:  5'- cGGUgGUCUCGCAgguggucaacacCGUGCUGAccgucgucugcgaGCUCGCg -3'
miRNA:   3'- -CUAgUAGAGCGU------------GCACGACU-------------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 35107 0.74 0.603825
Target:  5'- cGGUCuUCUUGCugGUGUggaucuUGAACUCGCc -3'
miRNA:   3'- -CUAGuAGAGCGugCACG------ACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 63153 0.74 0.635365
Target:  5'- cGGUgCcgC-CGCccgaggACGUGCUGAGCCCGCc -3'
miRNA:   3'- -CUA-GuaGaGCG------UGCACGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 109487 0.73 0.681509
Target:  5'- cGGUCGUCcagccacgCGUACGUGgUGAucaggaaggugagccGCCCGCg -3'
miRNA:   3'- -CUAGUAGa-------GCGUGCACgACU---------------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 48271 0.73 0.687755
Target:  5'- --gCGUgaCGCACcugcgGCUGGACCCGCg -3'
miRNA:   3'- cuaGUAgaGCGUGca---CGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 25421 0.73 0.698125
Target:  5'- -uUCcgCUCGCACGacgGCgUGucGCCCGCg -3'
miRNA:   3'- cuAGuaGAGCGUGCa--CG-ACu-UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 79736 0.73 0.698125
Target:  5'- --cCAUCUccgugagccCGCACGUGCggcauaUGGACCCGUc -3'
miRNA:   3'- cuaGUAGA---------GCGUGCACG------ACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 64314 0.72 0.738919
Target:  5'- --gCGUCUUGCGCGUGCcc-ACCaCGCg -3'
miRNA:   3'- cuaGUAGAGCGUGCACGacuUGG-GCG- -5'
25711 5' -53.1 NC_005337.1 + 72639 0.71 0.758766
Target:  5'- --aCGUUUCcaugGCG-GUGCUGGGCCCGCu -3'
miRNA:   3'- cuaGUAGAG----CGUgCACGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 98119 0.71 0.768517
Target:  5'- ---gAUCUCGCAgCGgggugaGCaUGGACCCGCa -3'
miRNA:   3'- cuagUAGAGCGU-GCa-----CG-ACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 131257 0.71 0.778139
Target:  5'- --aCAUCggcgCGCACGcgcUGCcgGAGCCCGUc -3'
miRNA:   3'- cuaGUAGa---GCGUGC---ACGa-CUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 127142 0.71 0.787624
Target:  5'- --aCAUCgUC-CGCGUGCUGA-UCCGCg -3'
miRNA:   3'- cuaGUAG-AGcGUGCACGACUuGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 98349 0.71 0.787624
Target:  5'- -uUCGUCaCGCACGUggacgggcggaaGCUGGACgCCGUg -3'
miRNA:   3'- cuAGUAGaGCGUGCA------------CGACUUG-GGCG- -5'
25711 5' -53.1 NC_005337.1 + 79591 0.71 0.796033
Target:  5'- --aCGUCcgugguguaggggUCGCGCGaGCgcagGAGCCCGCa -3'
miRNA:   3'- cuaGUAG-------------AGCGUGCaCGa---CUUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.