miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25712 3' -56.6 NC_005337.1 + 42133 0.66 0.836747
Target:  5'- --cGGCGCUgGC-CCGCGgc-GCgUCCg -3'
miRNA:   3'- ucaUCGCGAgCGcGGCGCaaaCG-AGG- -5'
25712 3' -56.6 NC_005337.1 + 36883 0.66 0.875614
Target:  5'- cAGUAGaugcgGUUCGCGCgGCGcg-GCguggCCg -3'
miRNA:   3'- -UCAUCg----CGAGCGCGgCGCaaaCGa---GG- -5'
25712 3' -56.6 NC_005337.1 + 50902 0.66 0.875614
Target:  5'- --gGGCGCgCGCGCCcaGCGgccGgUCCg -3'
miRNA:   3'- ucaUCGCGaGCGCGG--CGCaaaCgAGG- -5'
25712 3' -56.6 NC_005337.1 + 131925 0.66 0.836747
Target:  5'- -cUGGCGCggaucgUGCGCCGCGaccuauuCUCCc -3'
miRNA:   3'- ucAUCGCGa-----GCGCGGCGCaaac---GAGG- -5'
25712 3' -56.6 NC_005337.1 + 64194 0.66 0.844924
Target:  5'- ---cGCGCUCGCGCUcCGacaGCUCg -3'
miRNA:   3'- ucauCGCGAGCGCGGcGCaaaCGAGg -5'
25712 3' -56.6 NC_005337.1 + 40521 0.66 0.856042
Target:  5'- uGGUGGCGCUaccggcgaggaggcuUGCGCCgGCGggUcGCUg- -3'
miRNA:   3'- -UCAUCGCGA---------------GCGCGG-CGCaaA-CGAgg -5'
25712 3' -56.6 NC_005337.1 + 67277 0.66 0.868257
Target:  5'- uAGUAGCGCgacuugaGCcCCGCGUUgagGCg-- -3'
miRNA:   3'- -UCAUCGCGag-----CGcGGCGCAAa--CGagg -5'
25712 3' -56.6 NC_005337.1 + 56335 0.66 0.875614
Target:  5'- cGUGGUGCUCaaGCUGCccacGCUCUu -3'
miRNA:   3'- uCAUCGCGAGcgCGGCGcaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 10392 0.66 0.844924
Target:  5'- cAGcUGGUGCUCGgGCUGUGgaggUGCggCUg -3'
miRNA:   3'- -UC-AUCGCGAGCgCGGCGCaa--ACGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 133180 0.66 0.844924
Target:  5'- cGGcGGCGCU-GCGCCGgcUGUagcccGCUCCg -3'
miRNA:   3'- -UCaUCGCGAgCGCGGC--GCAaa---CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 69980 0.66 0.835919
Target:  5'- --cGGCGCUCGCucagacgGUCGaagaGcagUUGCUCCg -3'
miRNA:   3'- ucaUCGCGAGCG-------CGGCg---Ca--AACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 132182 0.66 0.860685
Target:  5'- cGGaGGCGCUgGCGCUgGCGUcgagcgcGCUCg -3'
miRNA:   3'- -UCaUCGCGAgCGCGG-CGCAaa-----CGAGg -5'
25712 3' -56.6 NC_005337.1 + 39106 0.66 0.860685
Target:  5'- cGUGGCGCggaagcucgCGgGCaGCGUgcGCUCg -3'
miRNA:   3'- uCAUCGCGa--------GCgCGgCGCAaaCGAGg -5'
25712 3' -56.6 NC_005337.1 + 18071 0.66 0.852906
Target:  5'- --gGGCGCacaCGCGCUggcagaggaGCGUggUGUUCCg -3'
miRNA:   3'- ucaUCGCGa--GCGCGG---------CGCAa-ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 77097 0.66 0.856042
Target:  5'- gAGUAGgugcggcacaugcucCGCagcaCGCGCCGgGUgcugcGCUCCa -3'
miRNA:   3'- -UCAUC---------------GCGa---GCGCGGCgCAaa---CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 126359 0.66 0.857598
Target:  5'- aGGUGGCGCUUGUGCagauccucguggaGCGggaGC-CCu -3'
miRNA:   3'- -UCAUCGCGAGCGCGg------------CGCaaaCGaGG- -5'
25712 3' -56.6 NC_005337.1 + 40925 0.67 0.828383
Target:  5'- cGGUGGCGCUgCGCGUccugCGCGUUgaagaUCg -3'
miRNA:   3'- -UCAUCGCGA-GCGCG----GCGCAAacg--AGg -5'
25712 3' -56.6 NC_005337.1 + 59881 0.67 0.819838
Target:  5'- cGGUGGCGCUgaUGUGCUGCagcgGgUCCc -3'
miRNA:   3'- -UCAUCGCGA--GCGCGGCGcaaaCgAGG- -5'
25712 3' -56.6 NC_005337.1 + 95689 0.67 0.819838
Target:  5'- ---uGCGCUCGCGCCaCGc---CUCCu -3'
miRNA:   3'- ucauCGCGAGCGCGGcGCaaacGAGG- -5'
25712 3' -56.6 NC_005337.1 + 81465 0.67 0.819838
Target:  5'- uAGUcGCGCagcaggUC-CGCCGUGguggGCUCCg -3'
miRNA:   3'- -UCAuCGCG------AGcGCGGCGCaaa-CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.