miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25712 3' -56.6 NC_005337.1 + 14182 0.66 0.868257
Target:  5'- cAGUAGCGUgucCGUGUCGCagg-GgUCCg -3'
miRNA:   3'- -UCAUCGCGa--GCGCGGCGcaaaCgAGG- -5'
25712 3' -56.6 NC_005337.1 + 18071 0.66 0.852906
Target:  5'- --gGGCGCacaCGCGCUggcagaggaGCGUggUGUUCCg -3'
miRNA:   3'- ucaUCGCGa--GCGCGG---------CGCAa-ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 10099 0.66 0.844924
Target:  5'- uGGUGGCGUaggaguacUCGCucuCCGCGUc-GCUCUc -3'
miRNA:   3'- -UCAUCGCG--------AGCGc--GGCGCAaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 117339 0.66 0.872697
Target:  5'- cGGUGGCGacggccaacgUCG-GCCGCGUggacgugcgcacGCUCCa -3'
miRNA:   3'- -UCAUCGCg---------AGCgCGGCGCAaa----------CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 126359 0.66 0.857598
Target:  5'- aGGUGGCGCUUGUGCagauccucguggaGCGggaGC-CCu -3'
miRNA:   3'- -UCAUCGCGAGCGCGg------------CGCaaaCGaGG- -5'
25712 3' -56.6 NC_005337.1 + 109904 0.66 0.875614
Target:  5'- cGUGcGCGUggaagaCGUGUCGCGUgggcaUGCUCUc -3'
miRNA:   3'- uCAU-CGCGa-----GCGCGGCGCAa----ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 26081 0.66 0.87416
Target:  5'- uGUAGCGCggcgcggggaaGCGCCGcCGgaUG-UCCa -3'
miRNA:   3'- uCAUCGCGag---------CGCGGC-GCaaACgAGG- -5'
25712 3' -56.6 NC_005337.1 + 29209 0.66 0.875614
Target:  5'- aGGaGGCGCUgcgcaGCGCCGCGcggccggGCgucgCCu -3'
miRNA:   3'- -UCaUCGCGAg----CGCGGCGCaaa----CGa---GG- -5'
25712 3' -56.6 NC_005337.1 + 80367 0.66 0.834257
Target:  5'- ---cGCGUUCGCGCCGgucgcggacccgguCGUgugGCUgCCg -3'
miRNA:   3'- ucauCGCGAGCGCGGC--------------GCAaa-CGA-GG- -5'
25712 3' -56.6 NC_005337.1 + 77097 0.66 0.856042
Target:  5'- gAGUAGgugcggcacaugcucCGCagcaCGCGCCGgGUgcugcGCUCCa -3'
miRNA:   3'- -UCAUC---------------GCGa---GCGCGGCgCAaa---CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 131925 0.66 0.836747
Target:  5'- -cUGGCGCggaucgUGCGCCGCGaccuauuCUCCc -3'
miRNA:   3'- ucAUCGCGa-----GCGCGGCGCaaac---GAGG- -5'
25712 3' -56.6 NC_005337.1 + 10392 0.66 0.844924
Target:  5'- cAGcUGGUGCUCGgGCUGUGgaggUGCggCUg -3'
miRNA:   3'- -UC-AUCGCGAGCgCGGCGCaa--ACGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 132182 0.66 0.860685
Target:  5'- cGGaGGCGCUgGCGCUgGCGUcgagcgcGCUCg -3'
miRNA:   3'- -UCaUCGCGAgCGCGG-CGCAaa-----CGAGg -5'
25712 3' -56.6 NC_005337.1 + 39106 0.66 0.860685
Target:  5'- cGUGGCGCggaagcucgCGgGCaGCGUgcGCUCg -3'
miRNA:   3'- uCAUCGCGa--------GCgCGgCGCAaaCGAGg -5'
25712 3' -56.6 NC_005337.1 + 100244 0.66 0.835919
Target:  5'- --cGGCaaGCUCguggaggGCGCCgaGCGggUGCUCCu -3'
miRNA:   3'- ucaUCG--CGAG-------CGCGG--CGCaaACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 133180 0.66 0.844924
Target:  5'- cGGcGGCGCU-GCGCCGgcUGUagcccGCUCCg -3'
miRNA:   3'- -UCaUCGCGAgCGCGGC--GCAaa---CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 69980 0.66 0.835919
Target:  5'- --cGGCGCUCGCucagacgGUCGaagaGcagUUGCUCCg -3'
miRNA:   3'- ucaUCGCGAGCG-------CGGCg---Ca--AACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 53605 0.66 0.836747
Target:  5'- ---cGCGCggaagCGCGCCGCGcaga-UCCa -3'
miRNA:   3'- ucauCGCGa----GCGCGGCGCaaacgAGG- -5'
25712 3' -56.6 NC_005337.1 + 42133 0.66 0.836747
Target:  5'- --cGGCGCUgGC-CCGCGgc-GCgUCCg -3'
miRNA:   3'- ucaUCGCGAgCGcGGCGCaaaCG-AGG- -5'
25712 3' -56.6 NC_005337.1 + 125912 0.66 0.868257
Target:  5'- -uUGGgaGCUCGUGCCGCGccucgcagaUUGCcCCg -3'
miRNA:   3'- ucAUCg-CGAGCGCGGCGCa--------AACGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.