miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25712 3' -56.6 NC_005337.1 + 16158 1.12 0.001298
Target:  5'- aAGUAGCGCUCGCGCCGCGUUUGCUCCa -3'
miRNA:   3'- -UCAUCGCGAGCGCGGCGCAAACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 53845 0.86 0.07817
Target:  5'- cGGcUGGCGCUgCGCGCCGCGgacgGCUCCu -3'
miRNA:   3'- -UC-AUCGCGA-GCGCGGCGCaaa-CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 133150 0.79 0.209811
Target:  5'- uGGUcGCGCgCGUGCUGCGgcUGCUCCc -3'
miRNA:   3'- -UCAuCGCGaGCGCGGCGCaaACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 133150 0.79 0.209811
Target:  5'- uGGUcGCGCgCGUGCUGCGgcUGCUCCc -3'
miRNA:   3'- -UCAuCGCGaGCGCGGCGCaaACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 105777 0.77 0.271456
Target:  5'- cAGUGccGCGCgccgCGCGCCGCGcggccgcauccgUGCUCCa -3'
miRNA:   3'- -UCAU--CGCGa---GCGCGGCGCaa----------ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 5957 0.76 0.33004
Target:  5'- cAGUcGCGCUCGCGCCGCGc--GCg-- -3'
miRNA:   3'- -UCAuCGCGAGCGCGGCGCaaaCGagg -5'
25712 3' -56.6 NC_005337.1 + 17563 0.74 0.402575
Target:  5'- aGGUcggAGUGCUUGUGCCGCGccaUUGCggCCg -3'
miRNA:   3'- -UCA---UCGCGAGCGCGGCGCa--AACGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 133092 0.74 0.420013
Target:  5'- cGUGccGCGCUCGCGCaccgccuaGCGggccGCUCCg -3'
miRNA:   3'- uCAU--CGCGAGCGCGg-------CGCaaa-CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 100678 0.74 0.447005
Target:  5'- ---cGCGUUCGCGCCGCGcgcGCggCCg -3'
miRNA:   3'- ucauCGCGAGCGCGGCGCaaaCGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 115552 0.73 0.456215
Target:  5'- cAGaGGCGCcagCGCGCCGCa---GCUCCu -3'
miRNA:   3'- -UCaUCGCGa--GCGCGGCGcaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 86240 0.73 0.456215
Target:  5'- ---cGCGCgucguUCGcCGCCGUGUUcgUGCUCCg -3'
miRNA:   3'- ucauCGCG-----AGC-GCGGCGCAA--ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 25735 0.73 0.474936
Target:  5'- cAGgcGCGCgccccgcaccgUCGCGCCguccaGCGUgcGCUCCa -3'
miRNA:   3'- -UCauCGCG-----------AGCGCGG-----CGCAaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 133759 0.73 0.474936
Target:  5'- --gAGCGCcUGCGCCGCGaggaGCUCUg -3'
miRNA:   3'- ucaUCGCGaGCGCGGCGCaaa-CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 133759 0.73 0.474936
Target:  5'- --gAGCGCcUGCGCCGCGaggaGCUCUg -3'
miRNA:   3'- ucaUCGCGaGCGCGGCGCaaa-CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 54126 0.73 0.494031
Target:  5'- --gAGCGCgacggcCGCGCCGCGcgcaugGCUCUa -3'
miRNA:   3'- ucaUCGCGa-----GCGCGGCGCaaa---CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 12704 0.72 0.50371
Target:  5'- cGGUGGCGUcCGCGCgCGCGccgcGCUCg -3'
miRNA:   3'- -UCAUCGCGaGCGCG-GCGCaaa-CGAGg -5'
25712 3' -56.6 NC_005337.1 + 71272 0.72 0.50371
Target:  5'- ---cGCGCUCauGCGCCGCGUggcgcuggUGCgcuUCCg -3'
miRNA:   3'- ucauCGCGAG--CGCGGCGCAa-------ACG---AGG- -5'
25712 3' -56.6 NC_005337.1 + 24733 0.72 0.50371
Target:  5'- gGGUAcGCGCccuacaccgccaUCGCGCCGCGcgggcgGCUCa -3'
miRNA:   3'- -UCAU-CGCG------------AGCGCGGCGCaaa---CGAGg -5'
25712 3' -56.6 NC_005337.1 + 95898 0.72 0.513471
Target:  5'- --gGGCGCUCGUGCuCGCGgcgacgGCggCCg -3'
miRNA:   3'- ucaUCGCGAGCGCG-GCGCaaa---CGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 1839 0.72 0.513471
Target:  5'- uGGUGGCGagggggUCGCaGCCGCGgcugaugaGCUCCu -3'
miRNA:   3'- -UCAUCGCg-----AGCG-CGGCGCaaa-----CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.