miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25712 3' -56.6 NC_005337.1 + 29719 0.69 0.686138
Target:  5'- gAGgcGCGCaCGCGCgCGCGgugUUGCggcggaCCa -3'
miRNA:   3'- -UCauCGCGaGCGCG-GCGCa--AACGa-----GG- -5'
25712 3' -56.6 NC_005337.1 + 101488 0.71 0.573452
Target:  5'- cAGgcGCuGCUCGCGCucaugCGCGagcGCUCCg -3'
miRNA:   3'- -UCauCG-CGAGCGCG-----GCGCaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 96954 0.71 0.604091
Target:  5'- --aGGUGCUCGcCGCgCGCGaccaGCUCCu -3'
miRNA:   3'- ucaUCGCGAGC-GCG-GCGCaaa-CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 74179 0.71 0.614356
Target:  5'- gAGgcGCGCUCGgGCCgggagucgGCGUUcgUGUUCUc -3'
miRNA:   3'- -UCauCGCGAGCgCGG--------CGCAA--ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 91011 0.7 0.634918
Target:  5'- aGGUGGCGCUgaggaacagCGCGUCaGCGg-UGCUCa -3'
miRNA:   3'- -UCAUCGCGA---------GCGCGG-CGCaaACGAGg -5'
25712 3' -56.6 NC_005337.1 + 123801 0.7 0.6452
Target:  5'- cGGgcGUGUUCuGCGCCGCccacgUGUUCCu -3'
miRNA:   3'- -UCauCGCGAG-CGCGGCGcaa--ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 44510 0.7 0.655471
Target:  5'- ---cGCGCaacUCGCGCuCGCGgcggaGCUCCu -3'
miRNA:   3'- ucauCGCG---AGCGCG-GCGCaaa--CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 122536 0.69 0.675949
Target:  5'- -cUGGCGCggcgacgCGCGCUGCagccgGUgcUGCUCCa -3'
miRNA:   3'- ucAUCGCGa------GCGCGGCG-----CAa-ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 38842 0.69 0.675949
Target:  5'- cGGUAGUGCuaUCGCugccCCGCGUgacGCUCg -3'
miRNA:   3'- -UCAUCGCG--AGCGc---GGCGCAaa-CGAGg -5'
25712 3' -56.6 NC_005337.1 + 97115 0.71 0.573452
Target:  5'- cAGUGGCGCUCGgcgguggcggaGCUGCGcgUGC-CCu -3'
miRNA:   3'- -UCAUCGCGAGCg----------CGGCGCaaACGaGG- -5'
25712 3' -56.6 NC_005337.1 + 38264 0.71 0.563314
Target:  5'- ---cGCGUUCGCGCuCGCGgc-GUUCCc -3'
miRNA:   3'- ucauCGCGAGCGCG-GCGCaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 76962 0.72 0.533215
Target:  5'- --cGGCGCUUG-GCCGCGcg-GUUCCg -3'
miRNA:   3'- ucaUCGCGAGCgCGGCGCaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 17563 0.74 0.402575
Target:  5'- aGGUcggAGUGCUUGUGCCGCGccaUUGCggCCg -3'
miRNA:   3'- -UCA---UCGCGAGCGCGGCGCa--AACGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 100678 0.74 0.447005
Target:  5'- ---cGCGUUCGCGCCGCGcgcGCggCCg -3'
miRNA:   3'- ucauCGCGAGCGCGGCGCaaaCGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 115552 0.73 0.456215
Target:  5'- cAGaGGCGCcagCGCGCCGCa---GCUCCu -3'
miRNA:   3'- -UCaUCGCGa--GCGCGGCGcaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 133759 0.73 0.474936
Target:  5'- --gAGCGCcUGCGCCGCGaggaGCUCUg -3'
miRNA:   3'- ucaUCGCGaGCGCGGCGCaaa-CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 25735 0.73 0.474936
Target:  5'- cAGgcGCGCgccccgcaccgUCGCGCCguccaGCGUgcGCUCCa -3'
miRNA:   3'- -UCauCGCG-----------AGCGCGG-----CGCAaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 71272 0.72 0.50371
Target:  5'- ---cGCGCUCauGCGCCGCGUggcgcuggUGCgcuUCCg -3'
miRNA:   3'- ucauCGCGAG--CGCGGCGCAa-------ACG---AGG- -5'
25712 3' -56.6 NC_005337.1 + 1839 0.72 0.513471
Target:  5'- uGGUGGCGagggggUCGCaGCCGCGgcugaugaGCUCCu -3'
miRNA:   3'- -UCAUCGCg-----AGCG-CGGCGCaaa-----CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 105106 0.72 0.523307
Target:  5'- cGGUcGCGCg-GCGCCGCGUUuuagGCUgCu -3'
miRNA:   3'- -UCAuCGCGagCGCGGCGCAAa---CGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.