miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25712 3' -56.6 NC_005337.1 + 1839 0.72 0.513471
Target:  5'- uGGUGGCGagggggUCGCaGCCGCGgcugaugaGCUCCu -3'
miRNA:   3'- -UCAUCGCg-----AGCG-CGGCGCaaa-----CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 2620 0.66 0.860685
Target:  5'- --cAGCGCggCGCGCa-CGg--GCUCCu -3'
miRNA:   3'- ucaUCGCGa-GCGCGgcGCaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 3019 0.67 0.819838
Target:  5'- cGGcAGCGCgugCGCGCCGaUGUgcGCgaCCa -3'
miRNA:   3'- -UCaUCGCGa--GCGCGGC-GCAaaCGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 4747 0.69 0.72635
Target:  5'- --cGGaCGCUCGCGCCGCGc--GCg-- -3'
miRNA:   3'- ucaUC-GCGAGCGCGGCGCaaaCGagg -5'
25712 3' -56.6 NC_005337.1 + 5957 0.76 0.33004
Target:  5'- cAGUcGCGCUCGCGCCGCGc--GCg-- -3'
miRNA:   3'- -UCAuCGCGAGCGCGGCGCaaaCGagg -5'
25712 3' -56.6 NC_005337.1 + 6345 0.67 0.811121
Target:  5'- ---cGCGCacCGCGuCCGCGUacUUGC-CCa -3'
miRNA:   3'- ucauCGCGa-GCGC-GGCGCA--AACGaGG- -5'
25712 3' -56.6 NC_005337.1 + 9963 0.67 0.80224
Target:  5'- --gAGCGCcUGCGCCGCGacgagGCcgcgUCCu -3'
miRNA:   3'- ucaUCGCGaGCGCGGCGCaaa--CG----AGG- -5'
25712 3' -56.6 NC_005337.1 + 10099 0.66 0.844924
Target:  5'- uGGUGGCGUaggaguacUCGCucuCCGCGUc-GCUCUc -3'
miRNA:   3'- -UCAUCGCG--------AGCGc--GGCGCAaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 10392 0.66 0.844924
Target:  5'- cAGcUGGUGCUCGgGCUGUGgaggUGCggCUg -3'
miRNA:   3'- -UC-AUCGCGAGCgCGGCGCaa--ACGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 10619 0.71 0.583633
Target:  5'- cGGcGGCGCcaggacgaccgUCGCGCCGCugcagaGCUCCa -3'
miRNA:   3'- -UCaUCGCG-----------AGCGCGGCGcaaa--CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 12704 0.72 0.50371
Target:  5'- cGGUGGCGUcCGCGCgCGCGccgcGCUCg -3'
miRNA:   3'- -UCAUCGCGaGCGCG-GCGCaaa-CGAGg -5'
25712 3' -56.6 NC_005337.1 + 13923 0.67 0.819838
Target:  5'- gGGUcgugGGCGggCGCaGCCcCGUcgUGCUCCa -3'
miRNA:   3'- -UCA----UCGCgaGCG-CGGcGCAa-ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 13968 0.68 0.746001
Target:  5'- --cGGCGCcguguacCGCGCCGCcg-UGCUCg -3'
miRNA:   3'- ucaUCGCGa------GCGCGGCGcaaACGAGg -5'
25712 3' -56.6 NC_005337.1 + 14182 0.66 0.868257
Target:  5'- cAGUAGCGUgucCGUGUCGCagg-GgUCCg -3'
miRNA:   3'- -UCAUCGCGa--GCGCGGCGcaaaCgAGG- -5'
25712 3' -56.6 NC_005337.1 + 16158 1.12 0.001298
Target:  5'- aAGUAGCGCUCGCGCCGCGUUUGCUCCa -3'
miRNA:   3'- -UCAUCGCGAGCGCGGCGCAAACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 17563 0.74 0.402575
Target:  5'- aGGUcggAGUGCUUGUGCCGCGccaUUGCggCCg -3'
miRNA:   3'- -UCA---UCGCGAGCGCGGCGCa--AACGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 18071 0.66 0.852906
Target:  5'- --gGGCGCacaCGCGCUggcagaggaGCGUggUGUUCCg -3'
miRNA:   3'- ucaUCGCGa--GCGCGG---------CGCAa-ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 24287 0.68 0.755681
Target:  5'- --cGGCGCUCaCGCaggGCGUggUGCUCg -3'
miRNA:   3'- ucaUCGCGAGcGCGg--CGCAa-ACGAGg -5'
25712 3' -56.6 NC_005337.1 + 24733 0.72 0.50371
Target:  5'- gGGUAcGCGCccuacaccgccaUCGCGCCGCGcgggcgGCUCa -3'
miRNA:   3'- -UCAU-CGCG------------AGCGCGGCGCaaa---CGAGg -5'
25712 3' -56.6 NC_005337.1 + 25069 0.66 0.860685
Target:  5'- gGGcGGCGUUCGUcaaGCUGCGcgacgccgaGCUCCg -3'
miRNA:   3'- -UCaUCGCGAGCG---CGGCGCaaa------CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.