miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25712 3' -56.6 NC_005337.1 + 105106 0.72 0.523307
Target:  5'- cGGUcGCGCg-GCGCCGCGUUuuagGCUgCu -3'
miRNA:   3'- -UCAuCGCGagCGCGGCGCAAa---CGAgG- -5'
25712 3' -56.6 NC_005337.1 + 76962 0.72 0.533215
Target:  5'- --cGGCGCUUG-GCCGCGcg-GUUCCg -3'
miRNA:   3'- ucaUCGCGAGCgCGGCGCaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 38264 0.71 0.563314
Target:  5'- ---cGCGUUCGCGCuCGCGgc-GUUCCc -3'
miRNA:   3'- ucauCGCGAGCGCG-GCGCaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 25367 0.71 0.564326
Target:  5'- aAGUGGCGCUgugugaucuuuaaggGCGCCGCGgugGCggCCu -3'
miRNA:   3'- -UCAUCGCGAg--------------CGCGGCGCaaaCGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 97115 0.71 0.573452
Target:  5'- cAGUGGCGCUCGgcgguggcggaGCUGCGcgUGC-CCu -3'
miRNA:   3'- -UCAUCGCGAGCg----------CGGCGCaaACGaGG- -5'
25712 3' -56.6 NC_005337.1 + 115361 0.71 0.573452
Target:  5'- gGGUAcGCGCUCaaGcCCGCGac-GCUCCa -3'
miRNA:   3'- -UCAU-CGCGAGcgC-GGCGCaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 101488 0.71 0.573452
Target:  5'- cAGgcGCuGCUCGCGCucaugCGCGagcGCUCCg -3'
miRNA:   3'- -UCauCG-CGAGCGCG-----GCGCaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 66285 0.71 0.583633
Target:  5'- uGGUGGCGCaCGCGCCgacccuggaccGCGUgaGCgCCg -3'
miRNA:   3'- -UCAUCGCGaGCGCGG-----------CGCAaaCGaGG- -5'
25712 3' -56.6 NC_005337.1 + 10619 0.71 0.583633
Target:  5'- cGGcGGCGCcaggacgaccgUCGCGCCGCugcagaGCUCCa -3'
miRNA:   3'- -UCaUCGCG-----------AGCGCGGCGcaaa--CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 96954 0.71 0.604091
Target:  5'- --aGGUGCUCGcCGCgCGCGaccaGCUCCu -3'
miRNA:   3'- ucaUCGCGAGC-GCG-GCGCaaa-CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 96022 0.71 0.614356
Target:  5'- --gAGCGCgaacgCGCGCCGCGUcucgucagGCagCCg -3'
miRNA:   3'- ucaUCGCGa----GCGCGGCGCAaa------CGa-GG- -5'
25712 3' -56.6 NC_005337.1 + 74179 0.71 0.614356
Target:  5'- gAGgcGCGCUCGgGCCgggagucgGCGUUcgUGUUCUc -3'
miRNA:   3'- -UCauCGCGAGCgCGG--------CGCAA--ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 94032 0.7 0.628747
Target:  5'- uGGUGGCGCggCGCGgCGCGgccgacgacuuCUCCg -3'
miRNA:   3'- -UCAUCGCGa-GCGCgGCGCaaac-------GAGG- -5'
25712 3' -56.6 NC_005337.1 + 91011 0.7 0.634918
Target:  5'- aGGUGGCGCUgaggaacagCGCGUCaGCGg-UGCUCa -3'
miRNA:   3'- -UCAUCGCGA---------GCGCGG-CGCaaACGAGg -5'
25712 3' -56.6 NC_005337.1 + 127882 0.7 0.634918
Target:  5'- uGGUGGCGCgcgGCGCCGgCGagcgcgUGCgggCCg -3'
miRNA:   3'- -UCAUCGCGag-CGCGGC-GCaa----ACGa--GG- -5'
25712 3' -56.6 NC_005337.1 + 39097 0.7 0.634918
Target:  5'- --cAGCGCUCGCGCUGCaaguacGUggGCUg- -3'
miRNA:   3'- ucaUCGCGAGCGCGGCG------CAaaCGAgg -5'
25712 3' -56.6 NC_005337.1 + 123801 0.7 0.6452
Target:  5'- cGGgcGUGUUCuGCGCCGCccacgUGUUCCu -3'
miRNA:   3'- -UCauCGCGAG-CGCGGCGcaa--ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 90844 0.7 0.6452
Target:  5'- gGGUGcCGCUCGcCGuCCGCGg--GCUCg -3'
miRNA:   3'- -UCAUcGCGAGC-GC-GGCGCaaaCGAGg -5'
25712 3' -56.6 NC_005337.1 + 97648 0.7 0.655471
Target:  5'- gAGUcgcuGCGCUCG-GUCGCGcgcgcGCUCCa -3'
miRNA:   3'- -UCAu---CGCGAGCgCGGCGCaaa--CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 44510 0.7 0.655471
Target:  5'- ---cGCGCaacUCGCGCuCGCGgcggaGCUCCu -3'
miRNA:   3'- ucauCGCG---AGCGCG-GCGCaaa--CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.