miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25712 5' -58.8 NC_005337.1 + 22925 0.66 0.761994
Target:  5'- gCCGGAGAGUCUCGGuGuGCUUUAa-- -3'
miRNA:   3'- -GGCCUCUCGGGGCUcCuCGAGAUguu -5'
25712 5' -58.8 NC_005337.1 + 87341 0.66 0.759154
Target:  5'- gCUGGAGAGCCggaugacguuguccUCGAGGucgGGCUCcagACAc -3'
miRNA:   3'- -GGCCUCUCGG--------------GGCUCC---UCGAGa--UGUu -5'
25712 5' -58.8 NC_005337.1 + 133469 0.66 0.752488
Target:  5'- gCGGAcGGCUCCGcGGAGCuggUCUGCc- -3'
miRNA:   3'- gGCCUcUCGGGGCuCCUCG---AGAUGuu -5'
25712 5' -58.8 NC_005337.1 + 103721 0.66 0.752488
Target:  5'- aCGGGGAGCUCCcc-GAGUccgUCUACGAa -3'
miRNA:   3'- gGCCUCUCGGGGcucCUCG---AGAUGUU- -5'
25712 5' -58.8 NC_005337.1 + 133469 0.66 0.752488
Target:  5'- gCGGAcGGCUCCGcGGAGCuggUCUGCc- -3'
miRNA:   3'- gGCCUcUCGGGGCuCCUCG---AGAUGuu -5'
25712 5' -58.8 NC_005337.1 + 116071 0.66 0.742877
Target:  5'- aCGGAcGGGCUCUGcacGGAGCgCUACAc -3'
miRNA:   3'- gGCCU-CUCGGGGCu--CCUCGaGAUGUu -5'
25712 5' -58.8 NC_005337.1 + 132388 0.66 0.729262
Target:  5'- gCGGAGucguaccGGCCCCggcccgcgaucuucGAGGAGCUCa---- -3'
miRNA:   3'- gGCCUC-------UCGGGG--------------CUCCUCGAGauguu -5'
25712 5' -58.8 NC_005337.1 + 94461 0.67 0.723376
Target:  5'- gCGGAGcAGCUCCGGGucGCUCggccGCAc -3'
miRNA:   3'- gGCCUC-UCGGGGCUCcuCGAGa---UGUu -5'
25712 5' -58.8 NC_005337.1 + 18693 0.67 0.723376
Target:  5'- gUCGGAGAcagcagcucggGCCCCggcGAGGAGCUgcgGCGc -3'
miRNA:   3'- -GGCCUCU-----------CGGGG---CUCCUCGAga-UGUu -5'
25712 5' -58.8 NC_005337.1 + 27958 0.67 0.713505
Target:  5'- gCCGGuucgaGGAGCaCCgGAaccuGGAGCUgUGCAAg -3'
miRNA:   3'- -GGCC-----UCUCG-GGgCU----CCUCGAgAUGUU- -5'
25712 5' -58.8 NC_005337.1 + 96930 0.67 0.713505
Target:  5'- gCGGAaacAGCCCCGcGGAGUUCcacccgUGCAAg -3'
miRNA:   3'- gGCCUc--UCGGGGCuCCUCGAG------AUGUU- -5'
25712 5' -58.8 NC_005337.1 + 91703 0.67 0.713505
Target:  5'- aCGGAGAGCCCCGcGGc-CUCcagccGCAGc -3'
miRNA:   3'- gGCCUCUCGGGGCuCCucGAGa----UGUU- -5'
25712 5' -58.8 NC_005337.1 + 46515 0.67 0.703565
Target:  5'- gCCGGAGuucGGCUCCuucGAGGAGCcCaGCGAc -3'
miRNA:   3'- -GGCCUC---UCGGGG---CUCCUCGaGaUGUU- -5'
25712 5' -58.8 NC_005337.1 + 58227 0.67 0.693566
Target:  5'- gCUGGAGgaGGCCgCCGAggaGGAGUUCUAgGc -3'
miRNA:   3'- -GGCCUC--UCGG-GGCU---CCUCGAGAUgUu -5'
25712 5' -58.8 NC_005337.1 + 75613 0.67 0.673425
Target:  5'- cCUGGGGAGCgCCGAGGAcGCgcggGCc- -3'
miRNA:   3'- -GGCCUCUCGgGGCUCCU-CGaga-UGuu -5'
25712 5' -58.8 NC_005337.1 + 22002 0.67 0.673425
Target:  5'- aCGGGGAGCCcauCCGGgacauGGAGCUCg---- -3'
miRNA:   3'- gGCCUCUCGG---GGCU-----CCUCGAGauguu -5'
25712 5' -58.8 NC_005337.1 + 68188 0.68 0.612464
Target:  5'- cCCuGAGcgcGGCCCCGGGGGcGCcgCUGCGGg -3'
miRNA:   3'- -GGcCUC---UCGGGGCUCCU-CGa-GAUGUU- -5'
25712 5' -58.8 NC_005337.1 + 53929 0.69 0.60231
Target:  5'- aCGGuGcGGCCaUCGGGGAGUUCUGCu- -3'
miRNA:   3'- gGCCuC-UCGG-GGCUCCUCGAGAUGuu -5'
25712 5' -58.8 NC_005337.1 + 66046 0.69 0.572008
Target:  5'- gUGGAgGAGCCCCaGGGGAGCgaccGCAu -3'
miRNA:   3'- gGCCU-CUCGGGG-CUCCUCGaga-UGUu -5'
25712 5' -58.8 NC_005337.1 + 131751 0.69 0.572008
Target:  5'- cCCGGAcguccGGGCCuCCGAGGuGCggcagCUGCu- -3'
miRNA:   3'- -GGCCU-----CUCGG-GGCUCCuCGa----GAUGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.