miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25746 3' -50.2 NC_005337.1 + 122203 0.69 0.94772
Target:  5'- aUCGCCGcgGGcgcGGACGUgucGGcGCGCACg -3'
miRNA:   3'- aAGUGGUa-CU---UCUGCAa--CCaUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 29314 0.67 0.981091
Target:  5'- gUUCAucugggUCAUGAAGACcUUGGaUACGUGCg -3'
miRNA:   3'- -AAGU------GGUACUUCUGcAACC-AUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 103434 0.67 0.983216
Target:  5'- gUCACCGaGAAcGCGcUGGUcucgACGCGCu -3'
miRNA:   3'- aAGUGGUaCUUcUGCaACCA----UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 77412 0.67 0.985156
Target:  5'- gUCGCCAUGcgcuGGCGgUGcaUGCGCACg -3'
miRNA:   3'- aAGUGGUACuu--CUGCaACc-AUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 127032 0.66 0.988212
Target:  5'- --gACCAUGcuGGCGgcgggcgcggaGGUGCGCACc -3'
miRNA:   3'- aagUGGUACuuCUGCaa---------CCAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 13741 0.66 0.988519
Target:  5'- cUUCACCAUGAacauGGucccGCGguccaUGGUGCaGCGCc -3'
miRNA:   3'- -AAGUGGUACU----UC----UGCa----ACCAUG-CGUG- -5'
25746 3' -50.2 NC_005337.1 + 55867 0.66 0.988519
Target:  5'- -cCGCCAUGGAGGCcaccgaUGcGUGCgGCGCa -3'
miRNA:   3'- aaGUGGUACUUCUGca----AC-CAUG-CGUG- -5'
25746 3' -50.2 NC_005337.1 + 131228 0.66 0.988519
Target:  5'- -cCGCCgGUGuguGGCGUacgUGGUcGCGCACa -3'
miRNA:   3'- aaGUGG-UACuu-CUGCA---ACCA-UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 36555 0.66 0.989961
Target:  5'- gUCGCCGagGAAGACca-GGUcCGCACc -3'
miRNA:   3'- aAGUGGUa-CUUCUGcaaCCAuGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 122785 0.68 0.970545
Target:  5'- --gAUCAUGGAcGCGUUGcUGCGCGCg -3'
miRNA:   3'- aagUGGUACUUcUGCAACcAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 133637 0.68 0.963927
Target:  5'- gUCGCCGUGcAGGACGUcgccgcgcUGG-ACGC-Cg -3'
miRNA:   3'- aAGUGGUAC-UUCUGCA--------ACCaUGCGuG- -5'
25746 3' -50.2 NC_005337.1 + 79660 0.68 0.963927
Target:  5'- aUCACCucGGAGAUGUacucgGGU-CGCACg -3'
miRNA:   3'- aAGUGGuaCUUCUGCAa----CCAuGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 121843 0.66 0.992418
Target:  5'- -aCGCCG-GAGGACa-UGGUugACGCGCu -3'
miRNA:   3'- aaGUGGUaCUUCUGcaACCA--UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 117823 0.7 0.915482
Target:  5'- -gCGCCcgGGgacccGGGCGg-GGUGCGCACg -3'
miRNA:   3'- aaGUGGuaCU-----UCUGCaaCCAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 107497 0.7 0.932815
Target:  5'- --gGCCGUcgucGAGGACGUgGGU-CGCACg -3'
miRNA:   3'- aagUGGUA----CUUCUGCAaCCAuGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 74352 0.69 0.938052
Target:  5'- --gGCCAUGAaaaAGAacaGUUGGUACaugGCGCa -3'
miRNA:   3'- aagUGGUACU---UCUg--CAACCAUG---CGUG- -5'
25746 3' -50.2 NC_005337.1 + 21399 0.69 0.94772
Target:  5'- cUUUGCCAUGAGcGACGUcaUGaaGCGCGCg -3'
miRNA:   3'- -AAGUGGUACUU-CUGCA--ACcaUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 10385 0.69 0.951725
Target:  5'- cUCGCCcuccggaAUGAAGACGaggccGUACGCGCc -3'
miRNA:   3'- aAGUGG-------UACUUCUGCaac--CAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 63977 0.69 0.952157
Target:  5'- uUUC-CCAUGguGAUG-UGGUGCGCGu -3'
miRNA:   3'- -AAGuGGUACuuCUGCaACCAUGCGUg -5'
25746 3' -50.2 NC_005337.1 + 102396 0.69 0.956334
Target:  5'- --gACCAUGGAGAUGaucgUGGaGCGCGa -3'
miRNA:   3'- aagUGGUACUUCUGCa---ACCaUGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.