miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25746 3' -50.2 NC_005337.1 + 3731 0.66 0.989961
Target:  5'- aUC-CCGUcGuuGACGUUGGcgcccGCGCGCa -3'
miRNA:   3'- aAGuGGUA-CuuCUGCAACCa----UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 19919 0.67 0.97877
Target:  5'- --gACCAgguAGGGCGUgUGGUACGCGa -3'
miRNA:   3'- aagUGGUac-UUCUGCA-ACCAUGCGUg -5'
25746 3' -50.2 NC_005337.1 + 94806 0.67 0.981091
Target:  5'- gUCGCCGgcacGGAGGCGUcguacuccaUcGUGCGCACc -3'
miRNA:   3'- aAGUGGUa---CUUCUGCA---------AcCAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 52008 0.67 0.981091
Target:  5'- -aCGCCGUGAcGGACGgccGcGCGCGCg -3'
miRNA:   3'- aaGUGGUACU-UCUGCaacCaUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 78619 0.67 0.981091
Target:  5'- cUUGCCGcgGGAGACGUUcgaGGUGaGCGCg -3'
miRNA:   3'- aAGUGGUa-CUUCUGCAA---CCAUgCGUG- -5'
25746 3' -50.2 NC_005337.1 + 60594 0.66 0.986409
Target:  5'- -gCGCCG-GAAGGCGUUGuagccguugaccuuGUGCGaCACg -3'
miRNA:   3'- aaGUGGUaCUUCUGCAAC--------------CAUGC-GUG- -5'
25746 3' -50.2 NC_005337.1 + 18113 0.66 0.988519
Target:  5'- -aCACCuugGAGGACucgaUGGUGCGCuCg -3'
miRNA:   3'- aaGUGGua-CUUCUGca--ACCAUGCGuG- -5'
25746 3' -50.2 NC_005337.1 + 81859 0.66 0.988519
Target:  5'- -gCGuCCGUGAAGAgGaUGGUGCaGUACc -3'
miRNA:   3'- aaGU-GGUACUUCUgCaACCAUG-CGUG- -5'
25746 3' -50.2 NC_005337.1 + 12918 0.66 0.989961
Target:  5'- cUUC-CCGUGcgccGAGugGcUGGUGCgGCGCg -3'
miRNA:   3'- -AAGuGGUAC----UUCugCaACCAUG-CGUG- -5'
25746 3' -50.2 NC_005337.1 + 133637 0.68 0.963927
Target:  5'- gUCGCCGUGcAGGACGUcgccgcgcUGG-ACGC-Cg -3'
miRNA:   3'- aAGUGGUAC-UUCUGCA--------ACCaUGCGuG- -5'
25746 3' -50.2 NC_005337.1 + 7462 0.68 0.963927
Target:  5'- -gCGuCCGUGgcGACGagGGcGCGCACg -3'
miRNA:   3'- aaGU-GGUACuuCUGCaaCCaUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 6221 0.68 0.963927
Target:  5'- cUguCCAgGAGGGCGUUGGgcACGUGCa -3'
miRNA:   3'- aAguGGUaCUUCUGCAACCa-UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 68615 0.72 0.86578
Target:  5'- cUUCGCgGUGggGugGUUcGGcGCGCAg -3'
miRNA:   3'- -AAGUGgUACuuCugCAA-CCaUGCGUg -5'
25746 3' -50.2 NC_005337.1 + 29608 0.7 0.915482
Target:  5'- -aCGCCAUGAcGACcUUGGgcACGCGCc -3'
miRNA:   3'- aaGUGGUACUuCUGcAACCa-UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 85195 0.7 0.919744
Target:  5'- -gCGCgAUGGAGGCGUUGGUcuugaacucguuguACaGCACc -3'
miRNA:   3'- aaGUGgUACUUCUGCAACCA--------------UG-CGUG- -5'
25746 3' -50.2 NC_005337.1 + 19634 0.7 0.921531
Target:  5'- gUUCACCggGggGAUcccgUGGU-CGCACa -3'
miRNA:   3'- -AAGUGGuaCuuCUGca--ACCAuGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 95615 0.7 0.927308
Target:  5'- -gCGCCAUGgcGGCGUccGUGgGCGCg -3'
miRNA:   3'- aaGUGGUACuuCUGCAacCAUgCGUG- -5'
25746 3' -50.2 NC_005337.1 + 65890 0.7 0.932815
Target:  5'- gUCGCCGUGAccgaGGACGgc-GUGCGCuGCu -3'
miRNA:   3'- aAGUGGUACU----UCUGCaacCAUGCG-UG- -5'
25746 3' -50.2 NC_005337.1 + 10423 0.69 0.94772
Target:  5'- -gCGCCcagGAGGACGccugcgcggcGGUGCGCGCg -3'
miRNA:   3'- aaGUGGua-CUUCUGCaa--------CCAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 122203 0.69 0.94772
Target:  5'- aUCGCCGcgGGcgcGGACGUgucGGcGCGCACg -3'
miRNA:   3'- aAGUGGUa-CU---UCUGCAa--CCaUGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.