miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25746 3' -50.2 NC_005337.1 + 3667 1.09 0.008114
Target:  5'- gUUCACCAUGAAGACGUUGGUACGCACg -3'
miRNA:   3'- -AAGUGGUACUUCUGCAACCAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 68615 0.72 0.86578
Target:  5'- cUUCGCgGUGggGugGUUcGGcGCGCAg -3'
miRNA:   3'- -AAGUGgUACuuCugCAA-CCaUGCGUg -5'
25746 3' -50.2 NC_005337.1 + 12318 0.71 0.90258
Target:  5'- gUUCGCCcgGAAGgaguccGCGUggUGGUGCaGCGCc -3'
miRNA:   3'- -AAGUGGuaCUUC------UGCA--ACCAUG-CGUG- -5'
25746 3' -50.2 NC_005337.1 + 117823 0.7 0.915482
Target:  5'- -gCGCCcgGGgacccGGGCGg-GGUGCGCACg -3'
miRNA:   3'- aaGUGGuaCU-----UCUGCaaCCAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 29608 0.7 0.915482
Target:  5'- -aCGCCAUGAcGACcUUGGgcACGCGCc -3'
miRNA:   3'- aaGUGGUACUuCUGcAACCa-UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 85195 0.7 0.919744
Target:  5'- -gCGCgAUGGAGGCGUUGGUcuugaacucguuguACaGCACc -3'
miRNA:   3'- aaGUGgUACUUCUGCAACCA--------------UG-CGUG- -5'
25746 3' -50.2 NC_005337.1 + 19634 0.7 0.921531
Target:  5'- gUUCACCggGggGAUcccgUGGU-CGCACa -3'
miRNA:   3'- -AAGUGGuaCuuCUGca--ACCAuGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 95615 0.7 0.927308
Target:  5'- -gCGCCAUGgcGGCGUccGUGgGCGCg -3'
miRNA:   3'- aaGUGGUACuuCUGCAacCAUgCGUG- -5'
25746 3' -50.2 NC_005337.1 + 107497 0.7 0.932815
Target:  5'- --gGCCGUcgucGAGGACGUgGGU-CGCACg -3'
miRNA:   3'- aagUGGUA----CUUCUGCAaCCAuGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 65890 0.7 0.932815
Target:  5'- gUCGCCGUGAccgaGGACGgc-GUGCGCuGCu -3'
miRNA:   3'- aAGUGGUACU----UCUGCaacCAUGCG-UG- -5'
25746 3' -50.2 NC_005337.1 + 74352 0.69 0.938052
Target:  5'- --gGCCAUGAaaaAGAacaGUUGGUACaugGCGCa -3'
miRNA:   3'- aagUGGUACU---UCUg--CAACCAUG---CGUG- -5'
25746 3' -50.2 NC_005337.1 + 10423 0.69 0.94772
Target:  5'- -gCGCCcagGAGGACGccugcgcggcGGUGCGCGCg -3'
miRNA:   3'- aaGUGGua-CUUCUGCaa--------CCAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 122203 0.69 0.94772
Target:  5'- aUCGCCGcgGGcgcGGACGUgucGGcGCGCACg -3'
miRNA:   3'- aAGUGGUa-CU---UCUGCAa--CCaUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 21399 0.69 0.94772
Target:  5'- cUUUGCCAUGAGcGACGUcaUGaaGCGCGCg -3'
miRNA:   3'- -AAGUGGUACUU-CUGCA--ACcaUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 10385 0.69 0.951725
Target:  5'- cUCGCCcuccggaAUGAAGACGaggccGUACGCGCc -3'
miRNA:   3'- aAGUGG-------UACUUCUGCaac--CAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 63977 0.69 0.952157
Target:  5'- uUUC-CCAUGguGAUG-UGGUGCGCGu -3'
miRNA:   3'- -AAGuGGUACuuCUGCaACCAUGCGUg -5'
25746 3' -50.2 NC_005337.1 + 102396 0.69 0.956334
Target:  5'- --gACCAUGGAGAUGaucgUGGaGCGCGa -3'
miRNA:   3'- aagUGGUACUUCUGCa---ACCaUGCGUg -5'
25746 3' -50.2 NC_005337.1 + 7462 0.68 0.963927
Target:  5'- -gCGuCCGUGgcGACGagGGcGCGCACg -3'
miRNA:   3'- aaGU-GGUACuuCUGCaaCCaUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 133637 0.68 0.963927
Target:  5'- gUCGCCGUGcAGGACGUcgccgcgcUGG-ACGC-Cg -3'
miRNA:   3'- aAGUGGUAC-UUCUGCA--------ACCaUGCGuG- -5'
25746 3' -50.2 NC_005337.1 + 6221 0.68 0.963927
Target:  5'- cUguCCAgGAGGGCGUUGGgcACGUGCa -3'
miRNA:   3'- aAguGGUaCUUCUGCAACCa-UGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.