Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25746 | 3' | -50.2 | NC_005337.1 | + | 3667 | 1.09 | 0.008114 |
Target: 5'- gUUCACCAUGAAGACGUUGGUACGCACg -3' miRNA: 3'- -AAGUGGUACUUCUGCAACCAUGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 3731 | 0.66 | 0.989961 |
Target: 5'- aUC-CCGUcGuuGACGUUGGcgcccGCGCGCa -3' miRNA: 3'- aAGuGGUA-CuuCUGCAACCa----UGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 6221 | 0.68 | 0.963927 |
Target: 5'- cUguCCAgGAGGGCGUUGGgcACGUGCa -3' miRNA: 3'- aAguGGUaCUUCUGCAACCa-UGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 7462 | 0.68 | 0.963927 |
Target: 5'- -gCGuCCGUGgcGACGagGGcGCGCACg -3' miRNA: 3'- aaGU-GGUACuuCUGCaaCCaUGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 10385 | 0.69 | 0.951725 |
Target: 5'- cUCGCCcuccggaAUGAAGACGaggccGUACGCGCc -3' miRNA: 3'- aAGUGG-------UACUUCUGCaac--CAUGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 10423 | 0.69 | 0.94772 |
Target: 5'- -gCGCCcagGAGGACGccugcgcggcGGUGCGCGCg -3' miRNA: 3'- aaGUGGua-CUUCUGCaa--------CCAUGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 12318 | 0.71 | 0.90258 |
Target: 5'- gUUCGCCcgGAAGgaguccGCGUggUGGUGCaGCGCc -3' miRNA: 3'- -AAGUGGuaCUUC------UGCA--ACCAUG-CGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 12918 | 0.66 | 0.989961 |
Target: 5'- cUUC-CCGUGcgccGAGugGcUGGUGCgGCGCg -3' miRNA: 3'- -AAGuGGUAC----UUCugCaACCAUG-CGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 13741 | 0.66 | 0.988519 |
Target: 5'- cUUCACCAUGAacauGGucccGCGguccaUGGUGCaGCGCc -3' miRNA: 3'- -AAGUGGUACU----UC----UGCa----ACCAUG-CGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 18113 | 0.66 | 0.988519 |
Target: 5'- -aCACCuugGAGGACucgaUGGUGCGCuCg -3' miRNA: 3'- aaGUGGua-CUUCUGca--ACCAUGCGuG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 19634 | 0.7 | 0.921531 |
Target: 5'- gUUCACCggGggGAUcccgUGGU-CGCACa -3' miRNA: 3'- -AAGUGGuaCuuCUGca--ACCAuGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 19919 | 0.67 | 0.97877 |
Target: 5'- --gACCAgguAGGGCGUgUGGUACGCGa -3' miRNA: 3'- aagUGGUac-UUCUGCA-ACCAUGCGUg -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 21399 | 0.69 | 0.94772 |
Target: 5'- cUUUGCCAUGAGcGACGUcaUGaaGCGCGCg -3' miRNA: 3'- -AAGUGGUACUU-CUGCA--ACcaUGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 24832 | 0.66 | 0.990497 |
Target: 5'- cUCGCCGUgcucGAgcggcgcgugcucgaGGACG-UGGUcGCGCACg -3' miRNA: 3'- aAGUGGUA----CU---------------UCUGCaACCA-UGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 29314 | 0.67 | 0.981091 |
Target: 5'- gUUCAucugggUCAUGAAGACcUUGGaUACGUGCg -3' miRNA: 3'- -AAGU------GGUACUUCUGcAACC-AUGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 29608 | 0.7 | 0.915482 |
Target: 5'- -aCGCCAUGAcGACcUUGGgcACGCGCc -3' miRNA: 3'- aaGUGGUACUuCUGcAACCa-UGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 36555 | 0.66 | 0.989961 |
Target: 5'- gUCGCCGagGAAGACca-GGUcCGCACc -3' miRNA: 3'- aAGUGGUa-CUUCUGcaaCCAuGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 52008 | 0.67 | 0.981091 |
Target: 5'- -aCGCCGUGAcGGACGgccGcGCGCGCg -3' miRNA: 3'- aaGUGGUACU-UCUGCaacCaUGCGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 55867 | 0.66 | 0.988519 |
Target: 5'- -cCGCCAUGGAGGCcaccgaUGcGUGCgGCGCa -3' miRNA: 3'- aaGUGGUACUUCUGca----AC-CAUG-CGUG- -5' |
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25746 | 3' | -50.2 | NC_005337.1 | + | 60594 | 0.66 | 0.986409 |
Target: 5'- -gCGCCG-GAAGGCGUUGuagccguugaccuuGUGCGaCACg -3' miRNA: 3'- aaGUGGUaCUUCUGCAAC--------------CAUGC-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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