miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25746 5' -57.9 NC_005337.1 + 5595 0.66 0.787257
Target:  5'- cGCGCGUGCccGGCGGGGgacgagcgUCUcGGUGc-- -3'
miRNA:   3'- -UGCGCACG--UCGUCCCa-------GGA-CCACuuc -5'
25746 5' -57.9 NC_005337.1 + 4597 0.66 0.777996
Target:  5'- uGCGCGUGCugguGCAGGaGcguguUCCUGcaGAAGu -3'
miRNA:   3'- -UGCGCACGu---CGUCC-C-----AGGACcaCUUC- -5'
25746 5' -57.9 NC_005337.1 + 23072 0.66 0.777996
Target:  5'- uCGUGgGCGGCucGGGGUCC-GG-GAAGa -3'
miRNA:   3'- uGCGCaCGUCG--UCCCAGGaCCaCUUC- -5'
25746 5' -57.9 NC_005337.1 + 51536 0.66 0.768604
Target:  5'- -gGCGUGCGGCugccGGG-CCUGGa---- -3'
miRNA:   3'- ugCGCACGUCGu---CCCaGGACCacuuc -5'
25746 5' -57.9 NC_005337.1 + 10483 0.67 0.749462
Target:  5'- gACGCGUGUAggacGCGGGGUCCUu------ -3'
miRNA:   3'- -UGCGCACGU----CGUCCCAGGAccacuuc -5'
25746 5' -57.9 NC_005337.1 + 111542 0.67 0.739731
Target:  5'- cCGCGUGCAGguCGGGGUCggcGGUGccGu -3'
miRNA:   3'- uGCGCACGUC--GUCCCAGga-CCACuuC- -5'
25746 5' -57.9 NC_005337.1 + 2122 0.67 0.719994
Target:  5'- cACGCGUGCAGCGGcGUUCUGu----- -3'
miRNA:   3'- -UGCGCACGUCGUCcCAGGACcacuuc -5'
25746 5' -57.9 NC_005337.1 + 101129 0.67 0.710007
Target:  5'- aGCGCG-GCuGCGcGGaCCUGGUGGAc -3'
miRNA:   3'- -UGCGCaCGuCGUcCCaGGACCACUUc -5'
25746 5' -57.9 NC_005337.1 + 111424 0.67 0.710007
Target:  5'- aGCGCGccGCgguccagcacgAGCGGGucGUCCUcGGUGAGGa -3'
miRNA:   3'- -UGCGCa-CG-----------UCGUCC--CAGGA-CCACUUC- -5'
25746 5' -57.9 NC_005337.1 + 68671 0.67 0.710007
Target:  5'- aGCGCGUGCAGCAGcGcGcUCUUGGc---- -3'
miRNA:   3'- -UGCGCACGUCGUC-C-C-AGGACCacuuc -5'
25746 5' -57.9 NC_005337.1 + 97805 0.68 0.689844
Target:  5'- gGC-CGUGCGGCAGG----UGGUGAAGa -3'
miRNA:   3'- -UGcGCACGUCGUCCcaggACCACUUC- -5'
25746 5' -57.9 NC_005337.1 + 4039 0.69 0.638742
Target:  5'- uACGCGUGCAGCGGcGUCUUGucGAGc -3'
miRNA:   3'- -UGCGCACGUCGUCcCAGGACcaCUUc -5'
25746 5' -57.9 NC_005337.1 + 81459 0.69 0.628472
Target:  5'- aGCGCGUagucgcGCAGCA-GGUCCgccgUGGUGGGc -3'
miRNA:   3'- -UGCGCA------CGUCGUcCCAGG----ACCACUUc -5'
25746 5' -57.9 NC_005337.1 + 97330 0.69 0.618206
Target:  5'- -gGCG-GUGGCGcGGuUCCUGGUGAAGu -3'
miRNA:   3'- ugCGCaCGUCGUcCC-AGGACCACUUC- -5'
25746 5' -57.9 NC_005337.1 + 79336 0.69 0.618206
Target:  5'- uCGCG-GUagaagagguuGGCGGGGUCCUGGUa--- -3'
miRNA:   3'- uGCGCaCG----------UCGUCCCAGGACCAcuuc -5'
25746 5' -57.9 NC_005337.1 + 8286 0.69 0.60795
Target:  5'- cGCGaCGUGCAGCGGGGUCUg------- -3'
miRNA:   3'- -UGC-GCACGUCGUCCCAGGaccacuuc -5'
25746 5' -57.9 NC_005337.1 + 84230 0.69 0.597712
Target:  5'- gGCGCG-GCcuGCGGGcaCUUGGUGAAGa -3'
miRNA:   3'- -UGCGCaCGu-CGUCCcaGGACCACUUC- -5'
25746 5' -57.9 NC_005337.1 + 67524 0.72 0.459902
Target:  5'- cGCGCGUGCGGCGG----UUGGUGAAGu -3'
miRNA:   3'- -UGCGCACGUCGUCccagGACCACUUC- -5'
25746 5' -57.9 NC_005337.1 + 46277 0.75 0.303315
Target:  5'- uGCGCGUGCAGCagcucaaGGGGUaCCUGGg---- -3'
miRNA:   3'- -UGCGCACGUCG-------UCCCA-GGACCacuuc -5'
25746 5' -57.9 NC_005337.1 + 127785 0.8 0.156808
Target:  5'- aGCGCGUGguGC-GGGUgCUGGUGGAc -3'
miRNA:   3'- -UGCGCACguCGuCCCAgGACCACUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.