miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25747 5' -55.5 NC_005337.1 + 4125 1.06 0.003844
Target:  5'- gACGCGCGGACAGAGGCAGAAGUAGUUg -3'
miRNA:   3'- -UGCGCGCCUGUCUCCGUCUUCAUCAA- -5'
25747 5' -55.5 NC_005337.1 + 69552 0.74 0.464151
Target:  5'- gGCGCGCGGGCuGcucGGcGCGGAGGUGGc- -3'
miRNA:   3'- -UGCGCGCCUGuC---UC-CGUCUUCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 6410 0.73 0.472792
Target:  5'- gUGCGUGGACAugcccguGAGGCAGAuGUGGa- -3'
miRNA:   3'- uGCGCGCCUGU-------CUCCGUCUuCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 19706 0.73 0.513127
Target:  5'- gUGUGCGGGCGGGGGCGGuAAGUc--- -3'
miRNA:   3'- uGCGCGCCUGUCUCCGUC-UUCAucaa -5'
25747 5' -55.5 NC_005337.1 + 133724 0.73 0.513127
Target:  5'- uACGCGCGG-CGGuGGCGG-AGUGGc- -3'
miRNA:   3'- -UGCGCGCCuGUCuCCGUCuUCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 133724 0.73 0.513127
Target:  5'- uACGCGCGG-CGGuGGCGG-AGUGGc- -3'
miRNA:   3'- -UGCGCGCCuGUCuCCGUCuUCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 110375 0.72 0.543512
Target:  5'- gGCGCGCGG-CAGcgacAGGCGGAGG-AGg- -3'
miRNA:   3'- -UGCGCGCCuGUC----UCCGUCUUCaUCaa -5'
25747 5' -55.5 NC_005337.1 + 29086 0.71 0.592185
Target:  5'- cGCGCGCGGaaaagguaggaaucGCAGAGGCugccgGGuAAGUAGg- -3'
miRNA:   3'- -UGCGCGCC--------------UGUCUCCG-----UC-UUCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 66626 0.71 0.616297
Target:  5'- aACGCcuuuCGGGCGGGcGGUGGGAGUGGUg -3'
miRNA:   3'- -UGCGc---GCCUGUCU-CCGUCUUCAUCAa -5'
25747 5' -55.5 NC_005337.1 + 67524 0.71 0.626808
Target:  5'- cGCGCGUGcGGCGGuuGguGAAGUAGg- -3'
miRNA:   3'- -UGCGCGC-CUGUCucCguCUUCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 133464 0.71 0.626808
Target:  5'- cGCGCGCGGACGGcuccGCGGAGcUGGUc -3'
miRNA:   3'- -UGCGCGCCUGUCuc--CGUCUUcAUCAa -5'
25747 5' -55.5 NC_005337.1 + 20015 0.71 0.626808
Target:  5'- uGCGgGCGGA-AGAGGUGGAGGUAcGUc -3'
miRNA:   3'- -UGCgCGCCUgUCUCCGUCUUCAU-CAa -5'
25747 5' -55.5 NC_005337.1 + 133464 0.71 0.626808
Target:  5'- cGCGCGCGGACGGcuccGCGGAGcUGGUc -3'
miRNA:   3'- -UGCGCGCCUGUCuc--CGUCUUcAUCAa -5'
25747 5' -55.5 NC_005337.1 + 31282 0.7 0.636271
Target:  5'- cGCGCuCGGGCacguccgAGGGGCAGAAGUAc-- -3'
miRNA:   3'- -UGCGcGCCUG-------UCUCCGUCUUCAUcaa -5'
25747 5' -55.5 NC_005337.1 + 60226 0.7 0.679248
Target:  5'- gGCGCGgGGGCuGGGGCuGggGUcGGa- -3'
miRNA:   3'- -UGCGCgCCUGuCUCCGuCuuCA-UCaa -5'
25747 5' -55.5 NC_005337.1 + 88944 0.7 0.68965
Target:  5'- aGCuCGCGGACcgcgcGGAGGCGGAGGgcGc- -3'
miRNA:   3'- -UGcGCGCCUG-----UCUCCGUCUUCauCaa -5'
25747 5' -55.5 NC_005337.1 + 81827 0.69 0.700003
Target:  5'- -aGCGCGGACAGGGGUc---GUAGa- -3'
miRNA:   3'- ugCGCGCCUGUCUCCGucuuCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 71868 0.69 0.710294
Target:  5'- gACGCcaCGGGC-GAGGCGGcGGUGGUg -3'
miRNA:   3'- -UGCGc-GCCUGuCUCCGUCuUCAUCAa -5'
25747 5' -55.5 NC_005337.1 + 122462 0.68 0.760504
Target:  5'- uCGCGCaGuGC-GAGGCAGAGGUGGc- -3'
miRNA:   3'- uGCGCGcC-UGuCUCCGUCUUCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 115144 0.68 0.760504
Target:  5'- gACGCGCGuGGCGGAGGCcugcguccgacAGAAGc---- -3'
miRNA:   3'- -UGCGCGC-CUGUCUCCG-----------UCUUCaucaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.