Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25747 | 5' | -55.5 | NC_005337.1 | + | 4125 | 1.06 | 0.003844 |
Target: 5'- gACGCGCGGACAGAGGCAGAAGUAGUUg -3' miRNA: 3'- -UGCGCGCCUGUCUCCGUCUUCAUCAA- -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 28501 | 0.67 | 0.845837 |
Target: 5'- gGCGCGCGGucgcgcggcacuGCGuGGGGCAGGcgcacucguccucggAGUAGa- -3' miRNA: 3'- -UGCGCGCC------------UGU-CUCCGUCU---------------UCAUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 18078 | 0.66 | 0.858752 |
Target: 5'- cACGCGCuGGCAGAGG-AGc-GUGGUg -3' miRNA: 3'- -UGCGCGcCUGUCUCCgUCuuCAUCAa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 69289 | 0.66 | 0.866544 |
Target: 5'- cGCGCGaCGGGCAGuucGcGCGGGAGaAGg- -3' miRNA: 3'- -UGCGC-GCCUGUCu--C-CGUCUUCaUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 865 | 0.66 | 0.874114 |
Target: 5'- -aGCGCGGGCGcggccGGGCGGAAG-AGc- -3' miRNA: 3'- ugCGCGCCUGUc----UCCGUCUUCaUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 6485 | 0.66 | 0.874114 |
Target: 5'- aGCGCGCGGACgaGGAGGUcGAucGgcGg- -3' miRNA: 3'- -UGCGCGCCUG--UCUCCGuCUu-CauCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 76327 | 0.66 | 0.881456 |
Target: 5'- cACGgGCGuGGCcguGAGGCAGAGG-AGc- -3' miRNA: 3'- -UGCgCGC-CUGu--CUCCGUCUUCaUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 41395 | 0.66 | 0.882177 |
Target: 5'- cGCGCGCGGGCAGAugacguccggcguccGCGGGAGc-GUg -3' miRNA: 3'- -UGCGCGCCUGUCUc--------------CGUCUUCauCAa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 1040 | 0.66 | 0.888563 |
Target: 5'- uGCGCGgGaGGCGGGcGGCGGGAGg---- -3' miRNA: 3'- -UGCGCgC-CUGUCU-CCGUCUUCaucaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 830 | 0.67 | 0.842525 |
Target: 5'- cGCGCGCGGGCccGGGCucgacGAAGgcGg- -3' miRNA: 3'- -UGCGCGCCUGucUCCGu----CUUCauCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 121708 | 0.67 | 0.834106 |
Target: 5'- cGCGCGCGG--GGAGGCGGAcaAGa---- -3' miRNA: 3'- -UGCGCGCCugUCUCCGUCU--UCaucaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 49932 | 0.68 | 0.769259 |
Target: 5'- aGCGCGgGGACAGcacgaccAGGCuGGAGGUGu-- -3' miRNA: 3'- -UGCGCgCCUGUC-------UCCG-UCUUCAUcaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 133724 | 0.73 | 0.513127 |
Target: 5'- uACGCGCGG-CGGuGGCGG-AGUGGc- -3' miRNA: 3'- -UGCGCGCCuGUCuCCGUCuUCAUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 110375 | 0.72 | 0.543512 |
Target: 5'- gGCGCGCGG-CAGcgacAGGCGGAGG-AGg- -3' miRNA: 3'- -UGCGCGCCuGUC----UCCGUCUUCaUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 20015 | 0.71 | 0.626808 |
Target: 5'- uGCGgGCGGA-AGAGGUGGAGGUAcGUc -3' miRNA: 3'- -UGCgCGCCUgUCUCCGUCUUCAU-CAa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 133464 | 0.71 | 0.626808 |
Target: 5'- cGCGCGCGGACGGcuccGCGGAGcUGGUc -3' miRNA: 3'- -UGCGCGCCUGUCuc--CGUCUUcAUCAa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 60226 | 0.7 | 0.679248 |
Target: 5'- gGCGCGgGGGCuGGGGCuGggGUcGGa- -3' miRNA: 3'- -UGCGCgCCUGuCUCCGuCuuCA-UCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 88944 | 0.7 | 0.68965 |
Target: 5'- aGCuCGCGGACcgcgcGGAGGCGGAGGgcGc- -3' miRNA: 3'- -UGcGCGCCUG-----UCUCCGUCUUCauCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 81827 | 0.69 | 0.700003 |
Target: 5'- -aGCGCGGACAGGGGUc---GUAGa- -3' miRNA: 3'- ugCGCGCCUGUCUCCGucuuCAUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 122462 | 0.68 | 0.760504 |
Target: 5'- uCGCGCaGuGC-GAGGCAGAGGUGGc- -3' miRNA: 3'- uGCGCGcC-UGuCUCCGUCUUCAUCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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