miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25762 5' -53.1 NC_005337.1 + 49038 0.84 0.201006
Target:  5'- ---cGGUGGUCGUCGCCAUCCUggCCGCc -3'
miRNA:   3'- accaCUACUAGUAGCGGUAGGA--GGCG- -5'
25762 5' -53.1 NC_005337.1 + 51858 0.66 0.959077
Target:  5'- aGGagcaGAUGcuggccuccAUCuUCGCCAucgccUCCUCCGCc -3'
miRNA:   3'- aCCa---CUAC---------UAGuAGCGGU-----AGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 52759 0.67 0.932303
Target:  5'- aGGUGGUGcUCAUCuCCGauaUCCgguccaaCCGCg -3'
miRNA:   3'- aCCACUACuAGUAGcGGU---AGGa------GGCG- -5'
25762 5' -53.1 NC_005337.1 + 52944 0.66 0.955223
Target:  5'- aGGaGAUGcuccagcccuUCGcgcCGCCGUUCUCCGCg -3'
miRNA:   3'- aCCaCUACu---------AGUa--GCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 54455 0.67 0.932303
Target:  5'- gGGUacaaGAUGAUCAggcacgUCGCCAUaaaCUCCu- -3'
miRNA:   3'- aCCA----CUACUAGU------AGCGGUAg--GAGGcg -5'
25762 5' -53.1 NC_005337.1 + 57312 0.66 0.962696
Target:  5'- cGGaGAUaGUC-UCGCUcaCCUCCGCg -3'
miRNA:   3'- aCCaCUAcUAGuAGCGGuaGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 63490 0.68 0.921386
Target:  5'- cGGUcgcGUGAagG-CGCUGUCCUCCGUg -3'
miRNA:   3'- aCCAc--UACUagUaGCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 65925 0.66 0.962696
Target:  5'- ------cGAUCGcgaccgCGCCGUCCUCCGg -3'
miRNA:   3'- accacuaCUAGUa-----GCGGUAGGAGGCg -5'
25762 5' -53.1 NC_005337.1 + 67079 0.66 0.966087
Target:  5'- gUGGUGAUGAgcaccuugCAgcccggCGCCGUgagCUCgCGCa -3'
miRNA:   3'- -ACCACUACUa-------GUa-----GCGGUAg--GAG-GCG- -5'
25762 5' -53.1 NC_005337.1 + 68815 0.68 0.91555
Target:  5'- cUGGUGGacGAguaCAaCGCCGucgcgcccuggcUCCUCCGCg -3'
miRNA:   3'- -ACCACUa-CUa--GUaGCGGU------------AGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 70809 0.68 0.909464
Target:  5'- cUGGUGAgcGUCAUCGacgaCAUCCagCCGa -3'
miRNA:   3'- -ACCACUacUAGUAGCg---GUAGGa-GGCg -5'
25762 5' -53.1 NC_005337.1 + 71057 0.67 0.932303
Target:  5'- gUGGcGAacaugcaccUGcgCcgCGCCGUCUUCUGCa -3'
miRNA:   3'- -ACCaCU---------ACuaGuaGCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 73426 0.68 0.896547
Target:  5'- gUGGUGcucggggaGAUCGUgCGCCAgUUCUUCGCg -3'
miRNA:   3'- -ACCACua------CUAGUA-GCGGU-AGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 74228 0.72 0.742495
Target:  5'- cGGcgGAUGAUCgggagggcggGUCGCCGcgcgggUCUCCGCg -3'
miRNA:   3'- aCCa-CUACUAG----------UAGCGGUa-----GGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 75160 0.7 0.809287
Target:  5'- cGGUGAgccgGAccgcccUCGUCGCCucgcgcgcGUCCgcgggCCGCg -3'
miRNA:   3'- aCCACUa---CU------AGUAGCGG--------UAGGa----GGCG- -5'
25762 5' -53.1 NC_005337.1 + 77168 0.68 0.921386
Target:  5'- gUGGUacagcuuccgGAaGAUCAgcgUCGCCGUCUcgcgcgugaUCCGCa -3'
miRNA:   3'- -ACCA----------CUaCUAGU---AGCGGUAGG---------AGGCG- -5'
25762 5' -53.1 NC_005337.1 + 81041 0.66 0.956404
Target:  5'- cUGGUGccuguccAUGAUC-UCGCggagcucgcggaugaCGUCCUCCGa -3'
miRNA:   3'- -ACCAC-------UACUAGuAGCG---------------GUAGGAGGCg -5'
25762 5' -53.1 NC_005337.1 + 81599 0.72 0.710099
Target:  5'- aUGGUGcaguacuuggaGAUCAUCGCCAuggccUCCUCCa- -3'
miRNA:   3'- -ACCACua---------CUAGUAGCGGU-----AGGAGGcg -5'
25762 5' -53.1 NC_005337.1 + 83109 0.71 0.762236
Target:  5'- aUGGUGAUGuUCcgCG-CGUCgCUCUGCg -3'
miRNA:   3'- -ACCACUACuAGuaGCgGUAG-GAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 84328 0.71 0.790909
Target:  5'- aGGUGAacaccuccagccUGGUCGU-GCUGUCC-CCGCg -3'
miRNA:   3'- aCCACU------------ACUAGUAgCGGUAGGaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.