miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25762 5' -53.1 NC_005337.1 + 4278 0.68 0.903128
Target:  5'- gUGGuUGAUGAUCAUguuggccagCGgCGUCCUgCCGg -3'
miRNA:   3'- -ACC-ACUACUAGUA---------GCgGUAGGA-GGCg -5'
25762 5' -53.1 NC_005337.1 + 7006 0.67 0.926971
Target:  5'- aUGGcGcgGAcgUCcgCGCCcgCCUCCaGCa -3'
miRNA:   3'- -ACCaCuaCU--AGuaGCGGuaGGAGG-CG- -5'
25762 5' -53.1 NC_005337.1 + 10447 0.7 0.852119
Target:  5'- cGGUGcgcgcGUCGUgCGCCAggaCCUCCGUg -3'
miRNA:   3'- aCCACuac--UAGUA-GCGGUa--GGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 12336 0.79 0.351332
Target:  5'- cGcGUGGUGGUgCAgCGCCGUCCgUCCGCg -3'
miRNA:   3'- aC-CACUACUA-GUaGCGGUAGG-AGGCG- -5'
25762 5' -53.1 NC_005337.1 + 15846 0.69 0.867836
Target:  5'- cUGGcgGAUGGU-GUCGcCCAUgCUCUGCa -3'
miRNA:   3'- -ACCa-CUACUAgUAGC-GGUAgGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 15883 1.13 0.002603
Target:  5'- gUGGUGAUGAUCAUCGCCAUCCUCCGCg -3'
miRNA:   3'- -ACCACUACUAGUAGCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 16769 0.68 0.91555
Target:  5'- cGGcUGAUGucgugcaccgCGUCGCCGUCCaUCaGCa -3'
miRNA:   3'- aCC-ACUACua--------GUAGCGGUAGG-AGgCG- -5'
25762 5' -53.1 NC_005337.1 + 18643 0.66 0.962696
Target:  5'- gGGUGGUGuGUgAUCGCCAgg-UCgGCg -3'
miRNA:   3'- aCCACUAC-UAgUAGCGGUaggAGgCG- -5'
25762 5' -53.1 NC_005337.1 + 19843 0.67 0.951131
Target:  5'- ---cGAUGAgccggaCGUCGUCCUCCGUg -3'
miRNA:   3'- accaCUACUagua--GCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 23877 0.66 0.955223
Target:  5'- aUGGccacGGUguUCGCCugccUCCUCCGCc -3'
miRNA:   3'- -ACCacuaCUAguAGCGGu---AGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 29861 0.66 0.969254
Target:  5'- aUGG-GgcGGUUggaGCCGUCCUCgGCg -3'
miRNA:   3'- -ACCaCuaCUAGuagCGGUAGGAGgCG- -5'
25762 5' -53.1 NC_005337.1 + 30392 0.67 0.946796
Target:  5'- aGGUGAggauGUCGagGCCGccgCgCUCCGCg -3'
miRNA:   3'- aCCACUac--UAGUagCGGUa--G-GAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 33365 0.69 0.88266
Target:  5'- cGGUGGUGcacauguagucGUCGgagCGCCG-CC-CCGCg -3'
miRNA:   3'- aCCACUAC-----------UAGUa--GCGGUaGGaGGCG- -5'
25762 5' -53.1 NC_005337.1 + 34782 0.67 0.932303
Target:  5'- cGGcGAcagGAUCAuggUCGCCAUCUgcgcgUCGCg -3'
miRNA:   3'- aCCaCUa--CUAGU---AGCGGUAGGa----GGCG- -5'
25762 5' -53.1 NC_005337.1 + 34843 0.68 0.914953
Target:  5'- --aUGAUGGggCAUauaugcggcggcgCGCCAUCCUCCGa -3'
miRNA:   3'- accACUACUa-GUA-------------GCGGUAGGAGGCg -5'
25762 5' -53.1 NC_005337.1 + 35091 0.67 0.937384
Target:  5'- cGGcGcgGAUCucgaCGCgCAUCgUCCGCg -3'
miRNA:   3'- aCCaCuaCUAGua--GCG-GUAGgAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 40132 0.66 0.966087
Target:  5'- -cGUGGUGGUCAUCuCCAUCgUgUGUu -3'
miRNA:   3'- acCACUACUAGUAGcGGUAGgAgGCG- -5'
25762 5' -53.1 NC_005337.1 + 43179 0.71 0.789974
Target:  5'- cGGUacacgcccaucccGAgcacGGUCAccgCGCCGUCCUUCGCg -3'
miRNA:   3'- aCCA-------------CUa---CUAGUa--GCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 43822 0.66 0.969254
Target:  5'- aGGUGGagaaGAUCAUgGCC-UCCg-CGCa -3'
miRNA:   3'- aCCACUa---CUAGUAgCGGuAGGagGCG- -5'
25762 5' -53.1 NC_005337.1 + 48367 0.66 0.955223
Target:  5'- cGGUGGUGGacgagaacgUCAgccgCGCC-UUCgagCCGCg -3'
miRNA:   3'- aCCACUACU---------AGUa---GCGGuAGGa--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.