miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25762 5' -53.1 NC_005337.1 + 7006 0.67 0.926971
Target:  5'- aUGGcGcgGAcgUCcgCGCCcgCCUCCaGCa -3'
miRNA:   3'- -ACCaCuaCU--AGuaGCGGuaGGAGG-CG- -5'
25762 5' -53.1 NC_005337.1 + 15846 0.69 0.867836
Target:  5'- cUGGcgGAUGGU-GUCGcCCAUgCUCUGCa -3'
miRNA:   3'- -ACCa-CUACUAgUAGC-GGUAgGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 96570 0.69 0.875362
Target:  5'- cGGUGGUGAagAgcUCGgCGUCCUggacgCCGCc -3'
miRNA:   3'- aCCACUACUagU--AGCgGUAGGA-----GGCG- -5'
25762 5' -53.1 NC_005337.1 + 73426 0.68 0.896547
Target:  5'- gUGGUGcucggggaGAUCGUgCGCCAgUUCUUCGCg -3'
miRNA:   3'- -ACCACua------CUAGUA-GCGGU-AGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 70809 0.68 0.909464
Target:  5'- cUGGUGAgcGUCAUCGacgaCAUCCagCCGa -3'
miRNA:   3'- -ACCACUacUAGUAGCg---GUAGGa-GGCg -5'
25762 5' -53.1 NC_005337.1 + 34843 0.68 0.914953
Target:  5'- --aUGAUGGggCAUauaugcggcggcgCGCCAUCCUCCGa -3'
miRNA:   3'- accACUACUa-GUA-------------GCGGUAGGAGGCg -5'
25762 5' -53.1 NC_005337.1 + 16769 0.68 0.91555
Target:  5'- cGGcUGAUGucgugcaccgCGUCGCCGUCCaUCaGCa -3'
miRNA:   3'- aCC-ACUACua--------GUAGCGGUAGG-AGgCG- -5'
25762 5' -53.1 NC_005337.1 + 68815 0.68 0.91555
Target:  5'- cUGGUGGacGAguaCAaCGCCGucgcgcccuggcUCCUCCGCg -3'
miRNA:   3'- -ACCACUa-CUa--GUaGCGGU------------AGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 63490 0.68 0.921386
Target:  5'- cGGUcgcGUGAagG-CGCUGUCCUCCGUg -3'
miRNA:   3'- aCCAc--UACUagUaGCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 10447 0.7 0.852119
Target:  5'- cGGUGcgcgcGUCGUgCGCCAggaCCUCCGUg -3'
miRNA:   3'- aCCACuac--UAGUA-GCGGUa--GGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 75160 0.7 0.809287
Target:  5'- cGGUGAgccgGAccgcccUCGUCGCCucgcgcgcGUCCgcgggCCGCg -3'
miRNA:   3'- aCCACUa---CU------AGUAGCGG--------UAGGa----GGCG- -5'
25762 5' -53.1 NC_005337.1 + 43179 0.71 0.789974
Target:  5'- cGGUacacgcccaucccGAgcacGGUCAccgCGCCGUCCUUCGCg -3'
miRNA:   3'- aCCA-------------CUa---CUAGUa--GCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 49038 0.84 0.201006
Target:  5'- ---cGGUGGUCGUCGCCAUCCUggCCGCc -3'
miRNA:   3'- accaCUACUAGUAGCGGUAGGA--GGCG- -5'
25762 5' -53.1 NC_005337.1 + 84905 0.75 0.545481
Target:  5'- cGGUGcgGcg-GUCGCCG-CCUCCGCg -3'
miRNA:   3'- aCCACuaCuagUAGCGGUaGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 81599 0.72 0.710099
Target:  5'- aUGGUGcaguacuuggaGAUCAUCGCCAuggccUCCUCCa- -3'
miRNA:   3'- -ACCACua---------CUAGUAGCGGU-----AGGAGGcg -5'
25762 5' -53.1 NC_005337.1 + 112924 0.72 0.742495
Target:  5'- gGGUGGUG--CGUCGUCGaCCUCCGg -3'
miRNA:   3'- aCCACUACuaGUAGCGGUaGGAGGCg -5'
25762 5' -53.1 NC_005337.1 + 74228 0.72 0.742495
Target:  5'- cGGcgGAUGAUCgggagggcggGUCGCCGcgcgggUCUCCGCg -3'
miRNA:   3'- aCCa-CUACUAG----------UAGCGGUa-----GGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 122711 0.72 0.752421
Target:  5'- aGGUGGUGGUCcgcgugcuGUCGCaCGUgC-CCGCg -3'
miRNA:   3'- aCCACUACUAG--------UAGCG-GUAgGaGGCG- -5'
25762 5' -53.1 NC_005337.1 + 83109 0.71 0.762236
Target:  5'- aUGGUGAUGuUCcgCG-CGUCgCUCUGCg -3'
miRNA:   3'- -ACCACUACuAGuaGCgGUAG-GAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 93841 0.71 0.781489
Target:  5'- aGGgucugGAUGuaGUCAUCGUagcugcucugCGUCCUCUGCg -3'
miRNA:   3'- aCCa----CUAC--UAGUAGCG----------GUAGGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.