miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 5' -55.1 NC_005337.1 + 32634 0.66 0.898702
Target:  5'- cGGccuUGGGguCGGGCaacaaaaacUUGUAUCCGAGCg -3'
miRNA:   3'- aCC---ACUUguGCCCG---------AACGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 35046 0.73 0.550975
Target:  5'- cUGGccGACACGGGCUuuaUGCGCgCGAAg -3'
miRNA:   3'- -ACCacUUGUGCCCGA---ACGUGgGCUUg -5'
25783 5' -55.1 NC_005337.1 + 35702 0.68 0.803771
Target:  5'- cUGGcGAGCGCGGGCUccgucuaccgGUGCgUGGACg -3'
miRNA:   3'- -ACCaCUUGUGCCCGAa---------CGUGgGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 37150 0.66 0.898702
Target:  5'- aGGUGAACAUGcc---GCACUCGGACu -3'
miRNA:   3'- aCCACUUGUGCccgaaCGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 38424 0.66 0.885051
Target:  5'- cUGGUGGACGaccagGGGCgcgucaucaCGCCCGAGg -3'
miRNA:   3'- -ACCACUUGUg----CCCGaac------GUGGGCUUg -5'
25783 5' -55.1 NC_005337.1 + 38475 0.7 0.706504
Target:  5'- cGGUGcGCGcCGGGCgcGCGCgucgCCGAGCu -3'
miRNA:   3'- aCCACuUGU-GCCCGaaCGUG----GGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 38505 0.66 0.917364
Target:  5'- aGGUGGccGCcCGGGC--GCGCCUGGuGCa -3'
miRNA:   3'- aCCACU--UGuGCCCGaaCGUGGGCU-UG- -5'
25783 5' -55.1 NC_005337.1 + 38645 0.66 0.905167
Target:  5'- aUGGcGA--GCGGGCccGCGCCCacGGACg -3'
miRNA:   3'- -ACCaCUugUGCCCGaaCGUGGG--CUUG- -5'
25783 5' -55.1 NC_005337.1 + 39948 0.66 0.911389
Target:  5'- cGGgcgccucGCGCGGGCgcucgacGCAUUCGAGCg -3'
miRNA:   3'- aCCacu----UGUGCCCGaa-----CGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 40025 0.66 0.898702
Target:  5'- cGGUGGAgaugcuaGCGGGCgucgucgcggUGCG-CCGAACc -3'
miRNA:   3'- aCCACUUg------UGCCCGa---------ACGUgGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 43661 0.67 0.846939
Target:  5'- gGGUGAACAggcacCGGGaaaucgUG-GCCCGGGCg -3'
miRNA:   3'- aCCACUUGU-----GCCCga----ACgUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 47494 0.68 0.803771
Target:  5'- aGGUGGAC-CGGaGCUcGCugaACCCGuACa -3'
miRNA:   3'- aCCACUUGuGCC-CGAaCG---UGGGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 48381 0.67 0.877874
Target:  5'- aUGGUGcccauGCuggaGGGCUccgUGUGCCCGAucGCg -3'
miRNA:   3'- -ACCACu----UGug--CCCGA---ACGUGGGCU--UG- -5'
25783 5' -55.1 NC_005337.1 + 49268 0.66 0.911389
Target:  5'- cUGGUGGACAUcgugcaGGGCgUGaucuCCgCGAACg -3'
miRNA:   3'- -ACCACUUGUG------CCCGaACgu--GG-GCUUG- -5'
25783 5' -55.1 NC_005337.1 + 49274 0.68 0.830227
Target:  5'- cGcGUGAacgGCAUcGGCgaacGCGCCCGGGCg -3'
miRNA:   3'- aC-CACU---UGUGcCCGaa--CGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 50373 0.66 0.894707
Target:  5'- cGGgcccGGGCACGGGCgccuggcgcggggGCGCgCCGcGCg -3'
miRNA:   3'- aCCa---CUUGUGCCCGaa-----------CGUG-GGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 50416 0.68 0.838681
Target:  5'- cGGUGAcggaGCgGCGGGCgcuucCGCCCGGGa -3'
miRNA:   3'- aCCACU----UG-UGCCCGaac--GUGGGCUUg -5'
25783 5' -55.1 NC_005337.1 + 55190 0.67 0.854995
Target:  5'- cGGUGGGCAUGcGCguguuccUGCACaCGAACa -3'
miRNA:   3'- aCCACUUGUGCcCGa------ACGUGgGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 56458 0.66 0.884344
Target:  5'- cGGUGGcCgagaccaaggucuACGGGCgcgUGCugCCGuACg -3'
miRNA:   3'- aCCACUuG-------------UGCCCGa--ACGugGGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 58723 0.7 0.716687
Target:  5'- aGGUagauGGGCGCGccGGCgcgggUGCACCgGAGCa -3'
miRNA:   3'- aCCA----CUUGUGC--CCGa----ACGUGGgCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.