miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 5' -55.1 NC_005337.1 + 662 0.67 0.846939
Target:  5'- cGGUGAccuccugcagcaGCAgCGGGCccUUGCGCgCGGAg -3'
miRNA:   3'- aCCACU------------UGU-GCCCG--AACGUGgGCUUg -5'
25783 5' -55.1 NC_005337.1 + 662 0.67 0.846939
Target:  5'- cGGUGAccuccugcagcaGCAgCGGGCccUUGCGCgCGGAg -3'
miRNA:   3'- aCCACU------------UGU-GCCCG--AACGUGgGCUUg -5'
25783 5' -55.1 NC_005337.1 + 731 0.69 0.77586
Target:  5'- cGGgguACGCGGGCgagagcgcgGCGCCCGcGGCc -3'
miRNA:   3'- aCCacuUGUGCCCGaa-------CGUGGGC-UUG- -5'
25783 5' -55.1 NC_005337.1 + 731 0.69 0.77586
Target:  5'- cGGgguACGCGGGCgagagcgcgGCGCCCGcGGCc -3'
miRNA:   3'- aCCacuUGUGCCCGaa-------CGUGGGC-UUG- -5'
25783 5' -55.1 NC_005337.1 + 860 0.68 0.821585
Target:  5'- cGG-GcAGCGCGGGC--GCGgCCGGGCg -3'
miRNA:   3'- aCCaC-UUGUGCCCGaaCGUgGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 860 0.68 0.821585
Target:  5'- cGG-GcAGCGCGGGC--GCGgCCGGGCg -3'
miRNA:   3'- aCCaC-UUGUGCCCGaaCGUgGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 1434 0.66 0.917364
Target:  5'- gUGGUGuAUGCcGGCgaucgUGCACgUGAACg -3'
miRNA:   3'- -ACCACuUGUGcCCGa----ACGUGgGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 2201 0.74 0.471631
Target:  5'- cGGcGGACGCGGGC--GCGgCCCGGGCc -3'
miRNA:   3'- aCCaCUUGUGCCCGaaCGU-GGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 8850 0.68 0.830227
Target:  5'- ---cGAGCACgGGGCgacugGC-CCCGGGCa -3'
miRNA:   3'- accaCUUGUG-CCCGaa---CGuGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 13746 0.68 0.794617
Target:  5'- gUGGUGAGCGUGauCUccgcGCGCCCGAACg -3'
miRNA:   3'- -ACCACUUGUGCccGAa---CGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 13800 0.66 0.891995
Target:  5'- ---cGGACACguGGGCgaUGC-CCCGGACg -3'
miRNA:   3'- accaCUUGUG--CCCGa-ACGuGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 15849 0.69 0.746745
Target:  5'- cGGcGAGCGCGGGCUUgGCgGCUCGccGGCc -3'
miRNA:   3'- aCCaCUUGUGCCCGAA-CG-UGGGC--UUG- -5'
25783 5' -55.1 NC_005337.1 + 17926 0.66 0.889246
Target:  5'- ---aGGACGCGGGUcauggcccggcgcUGCGCCCGcAGCa -3'
miRNA:   3'- accaCUUGUGCCCGa------------ACGUGGGC-UUG- -5'
25783 5' -55.1 NC_005337.1 + 18342 0.69 0.77586
Target:  5'- gUGGUccGAGCACGGGCccGUGgCCGAc- -3'
miRNA:   3'- -ACCA--CUUGUGCCCGaaCGUgGGCUug -5'
25783 5' -55.1 NC_005337.1 + 18909 0.73 0.561213
Target:  5'- cUGGagcguCGCGGGCUUgagcgcGUACCCGAACa -3'
miRNA:   3'- -ACCacuu-GUGCCCGAA------CGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 22755 0.7 0.706504
Target:  5'- cGGcgGAGCGCGGGCUcgguaUGCGgCUGuACa -3'
miRNA:   3'- aCCa-CUUGUGCCCGA-----ACGUgGGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 24852 1.1 0.002303
Target:  5'- cUGGUGAACACGGGCUUGCACCCGAACa -3'
miRNA:   3'- -ACCACUUGUGCCCGAACGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 28627 0.67 0.86284
Target:  5'- aUGGUGAGCACGGuccggaGCacgaGCCCGAc- -3'
miRNA:   3'- -ACCACUUGUGCC------CGaacgUGGGCUug -5'
25783 5' -55.1 NC_005337.1 + 29594 0.7 0.706504
Target:  5'- cGGaUGAGCuuGGuCUUGCGCCCGcGGCa -3'
miRNA:   3'- aCC-ACUUGugCCcGAACGUGGGC-UUG- -5'
25783 5' -55.1 NC_005337.1 + 29745 0.66 0.917364
Target:  5'- cGGcGGACcaGCGGGCcggGCuCCuCGAACg -3'
miRNA:   3'- aCCaCUUG--UGCCCGaa-CGuGG-GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.