Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25783 | 5' | -55.1 | NC_005337.1 | + | 24852 | 1.1 | 0.002303 |
Target: 5'- cUGGUGAACACGGGCUUGCACCCGAACa -3' miRNA: 3'- -ACCACUUGUGCCCGAACGUGGGCUUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 76655 | 0.68 | 0.803771 |
Target: 5'- uUGGUGAACACGucccGGag-GUGCuuGAGCa -3' miRNA: 3'- -ACCACUUGUGC----CCgaaCGUGggCUUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 98131 | 0.68 | 0.821585 |
Target: 5'- gGGUGAGCAUGGaCccGCACgCCGcGCa -3' miRNA: 3'- aCCACUUGUGCCcGaaCGUG-GGCuUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 94844 | 0.66 | 0.917364 |
Target: 5'- ---cGAGCGCGGcccgaGCggGCGCCCGcGCg -3' miRNA: 3'- accaCUUGUGCC-----CGaaCGUGGGCuUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 35046 | 0.73 | 0.550975 |
Target: 5'- cUGGccGACACGGGCUuuaUGCGCgCGAAg -3' miRNA: 3'- -ACCacUUGUGCCCGA---ACGUGgGCUUg -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 18909 | 0.73 | 0.561213 |
Target: 5'- cUGGagcguCGCGGGCUUgagcgcGUACCCGAACa -3' miRNA: 3'- -ACCacuu-GUGCCCGAA------CGUGGGCUUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 73506 | 0.71 | 0.665212 |
Target: 5'- -cGUGAAgGCGGuGCUggGCACCCGcgaGGCg -3' miRNA: 3'- acCACUUgUGCC-CGAa-CGUGGGC---UUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 121760 | 0.71 | 0.665212 |
Target: 5'- cGGUGAACccggaggucACGcGGC-UGCugCUGGACg -3' miRNA: 3'- aCCACUUG---------UGC-CCGaACGugGGCUUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 58723 | 0.7 | 0.716687 |
Target: 5'- aGGUagauGGGCGCGccGGCgcgggUGCACCgGAGCa -3' miRNA: 3'- aCCA----CUUGUGC--CCGa----ACGUGGgCUUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 13746 | 0.68 | 0.794617 |
Target: 5'- gUGGUGAGCGUGauCUccgcGCGCCCGAACg -3' miRNA: 3'- -ACCACUUGUGCccGAa---CGUGGGCUUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 18342 | 0.69 | 0.77586 |
Target: 5'- gUGGUccGAGCACGGGCccGUGgCCGAc- -3' miRNA: 3'- -ACCA--CUUGUGCCCGaaCGUgGGCUug -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 38475 | 0.7 | 0.706504 |
Target: 5'- cGGUGcGCGcCGGGCgcGCGCgucgCCGAGCu -3' miRNA: 3'- aCCACuUGU-GCCCGaaCGUG----GGCUUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 79322 | 0.74 | 0.481252 |
Target: 5'- cGGcGAAUACGGGCUucgUGUACaCCGAGa -3' miRNA: 3'- aCCaCUUGUGCCCGA---ACGUG-GGCUUg -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 731 | 0.69 | 0.77586 |
Target: 5'- cGGgguACGCGGGCgagagcgcgGCGCCCGcGGCc -3' miRNA: 3'- aCCacuUGUGCCCGaa-------CGUGGGC-UUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 65522 | 0.73 | 0.520634 |
Target: 5'- cUGGUGAACcUGGuGCgcgUGCGCUCGAAa -3' miRNA: 3'- -ACCACUUGuGCC-CGa--ACGUGGGCUUg -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 22755 | 0.7 | 0.706504 |
Target: 5'- cGGcgGAGCGCGGGCUcgguaUGCGgCUGuACa -3' miRNA: 3'- aCCa-CUUGUGCCCGA-----ACGUgGGCuUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 108835 | 0.69 | 0.78249 |
Target: 5'- cGGUGccgaagcGCGCGGGCgacacgccgucgUGCgagcggaACCCGAACu -3' miRNA: 3'- aCCACu------UGUGCCCGa-----------ACG-------UGGGCUUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 77066 | 0.68 | 0.821585 |
Target: 5'- cGaGUuuuCGCGGGCgcgGCACCCGuACg -3' miRNA: 3'- aC-CAcuuGUGCCCGaa-CGUGGGCuUG- -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 119825 | 0.73 | 0.53068 |
Target: 5'- gGGUGGcaGCGCGGcGCUcgGUACCCGGc- -3' miRNA: 3'- aCCACU--UGUGCC-CGAa-CGUGGGCUug -5' |
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25783 | 5' | -55.1 | NC_005337.1 | + | 118203 | 0.71 | 0.654796 |
Target: 5'- cGGUGGGCGCGGaGC---CGCCCGAc- -3' miRNA: 3'- aCCACUUGUGCC-CGaacGUGGGCUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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