miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 5' -55.1 NC_005337.1 + 24852 1.1 0.002303
Target:  5'- cUGGUGAACACGGGCUUGCACCCGAACa -3'
miRNA:   3'- -ACCACUUGUGCCCGAACGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 128788 0.75 0.416095
Target:  5'- cGG-GucCACGGGCgUGCGCaCCGAGCg -3'
miRNA:   3'- aCCaCuuGUGCCCGaACGUG-GGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 2201 0.74 0.471631
Target:  5'- cGGcGGACGCGGGC--GCGgCCCGGGCc -3'
miRNA:   3'- aCCaCUUGUGCCCGaaCGU-GGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 79322 0.74 0.481252
Target:  5'- cGGcGAAUACGGGCUucgUGUACaCCGAGa -3'
miRNA:   3'- aCCaCUUGUGCCCGA---ACGUG-GGCUUg -5'
25783 5' -55.1 NC_005337.1 + 65522 0.73 0.520634
Target:  5'- cUGGUGAACcUGGuGCgcgUGCGCUCGAAa -3'
miRNA:   3'- -ACCACUUGuGCC-CGa--ACGUGGGCUUg -5'
25783 5' -55.1 NC_005337.1 + 119825 0.73 0.53068
Target:  5'- gGGUGGcaGCGCGGcGCUcgGUACCCGGc- -3'
miRNA:   3'- aCCACU--UGUGCC-CGAa-CGUGGGCUug -5'
25783 5' -55.1 NC_005337.1 + 35046 0.73 0.550975
Target:  5'- cUGGccGACACGGGCUuuaUGCGCgCGAAg -3'
miRNA:   3'- -ACCacUUGUGCCCGA---ACGUGgGCUUg -5'
25783 5' -55.1 NC_005337.1 + 18909 0.73 0.561213
Target:  5'- cUGGagcguCGCGGGCUUgagcgcGUACCCGAACa -3'
miRNA:   3'- -ACCacuu-GUGCCCGAA------CGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 114658 0.72 0.591167
Target:  5'- cGGUGAACGCGGGCcucgagGcCGCCUcuccgcuGGACg -3'
miRNA:   3'- aCCACUUGUGCCCGaa----C-GUGGG-------CUUG- -5'
25783 5' -55.1 NC_005337.1 + 74613 0.71 0.629738
Target:  5'- -cGUGcuCGCGGGCgccgacaagguggUGCACCCGGAg -3'
miRNA:   3'- acCACuuGUGCCCGa------------ACGUGGGCUUg -5'
25783 5' -55.1 NC_005337.1 + 118203 0.71 0.654796
Target:  5'- cGGUGGGCGCGGaGC---CGCCCGAc- -3'
miRNA:   3'- aCCACUUGUGCC-CGaacGUGGGCUug -5'
25783 5' -55.1 NC_005337.1 + 121760 0.71 0.665212
Target:  5'- cGGUGAACccggaggucACGcGGC-UGCugCUGGACg -3'
miRNA:   3'- aCCACUUG---------UGC-CCGaACGugGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 73506 0.71 0.665212
Target:  5'- -cGUGAAgGCGGuGCUggGCACCCGcgaGGCg -3'
miRNA:   3'- acCACUUgUGCC-CGAa-CGUGGGC---UUG- -5'
25783 5' -55.1 NC_005337.1 + 29594 0.7 0.706504
Target:  5'- cGGaUGAGCuuGGuCUUGCGCCCGcGGCa -3'
miRNA:   3'- aCC-ACUUGugCCcGAACGUGGGC-UUG- -5'
25783 5' -55.1 NC_005337.1 + 22755 0.7 0.706504
Target:  5'- cGGcgGAGCGCGGGCUcgguaUGCGgCUGuACa -3'
miRNA:   3'- aCCa-CUUGUGCCCGA-----ACGUgGGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 38475 0.7 0.706504
Target:  5'- cGGUGcGCGcCGGGCgcGCGCgucgCCGAGCu -3'
miRNA:   3'- aCCACuUGU-GCCCGaaCGUG----GGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 58723 0.7 0.716687
Target:  5'- aGGUagauGGGCGCGccGGCgcgggUGCACCgGAGCa -3'
miRNA:   3'- aCCA----CUUGUGC--CCGa----ACGUGGgCUUG- -5'
25783 5' -55.1 NC_005337.1 + 73088 0.7 0.736817
Target:  5'- cUGGUGAAgACGcGCgugUGCACCaaggaGGACu -3'
miRNA:   3'- -ACCACUUgUGCcCGa--ACGUGGg----CUUG- -5'
25783 5' -55.1 NC_005337.1 + 58836 0.7 0.736817
Target:  5'- cGGUGA--ACGGGCUcG-ACCUGGACu -3'
miRNA:   3'- aCCACUugUGCCCGAaCgUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 15849 0.69 0.746745
Target:  5'- cGGcGAGCGCGGGCUUgGCgGCUCGccGGCc -3'
miRNA:   3'- aCCaCUUGUGCCCGAA-CG-UGGGC--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.