miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 5' -55.1 NC_005337.1 + 83023 0.66 0.917364
Target:  5'- cGGUGAcgccguACACGGcggacaccgucaGCaUGCugCUGGGCg -3'
miRNA:   3'- aCCACU------UGUGCC------------CGaACGugGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 32634 0.66 0.898702
Target:  5'- cGGccuUGGGguCGGGCaacaaaaacUUGUAUCCGAGCg -3'
miRNA:   3'- aCC---ACUUguGCCCG---------AACGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 13800 0.66 0.891995
Target:  5'- ---cGGACACguGGGCgaUGC-CCCGGACg -3'
miRNA:   3'- accaCUUGUG--CCCGa-ACGuGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 131890 0.66 0.885051
Target:  5'- --cUGGAgGCGGGCgcGCACgUGGACg -3'
miRNA:   3'- accACUUgUGCCCGaaCGUGgGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 56458 0.66 0.884344
Target:  5'- cGGUGGcCgagaccaaggucuACGGGCgcgUGCugCCGuACg -3'
miRNA:   3'- aCCACUuG-------------UGCCCGa--ACGugGGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 38424 0.66 0.885051
Target:  5'- cUGGUGGACGaccagGGGCgcgucaucaCGCCCGAGg -3'
miRNA:   3'- -ACCACUUGUg----CCCGaac------GUGGGCUUg -5'
25783 5' -55.1 NC_005337.1 + 64260 0.66 0.885051
Target:  5'- cGGcucugGGACcCGGGC--GCGCCgGAGCa -3'
miRNA:   3'- aCCa----CUUGuGCCCGaaCGUGGgCUUG- -5'
25783 5' -55.1 NC_005337.1 + 17926 0.66 0.889246
Target:  5'- ---aGGACGCGGGUcauggcccggcgcUGCGCCCGcAGCa -3'
miRNA:   3'- accaCUUGUGCCCGa------------ACGUGGGC-UUG- -5'
25783 5' -55.1 NC_005337.1 + 108975 0.66 0.891995
Target:  5'- cGGUcGACGCGcGGCccgcccgccgUGCGCgCGAACu -3'
miRNA:   3'- aCCAcUUGUGC-CCGa---------ACGUGgGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 71076 0.66 0.898702
Target:  5'- uUGGUGcGGCGCuuGGGC-UGCuugACCgGAGCg -3'
miRNA:   3'- -ACCAC-UUGUG--CCCGaACG---UGGgCUUG- -5'
25783 5' -55.1 NC_005337.1 + 110454 0.66 0.898702
Target:  5'- cGGcUGAACAgcGGCUUGUagucGCCCGuGCg -3'
miRNA:   3'- aCC-ACUUGUgcCCGAACG----UGGGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 110523 0.66 0.903894
Target:  5'- gUGGUGAACACGGcGCccaccaggcuguguuUUGCcgugucgaaggucucGCCCuuGAACc -3'
miRNA:   3'- -ACCACUUGUGCC-CG---------------AACG---------------UGGG--CUUG- -5'
25783 5' -55.1 NC_005337.1 + 93294 0.66 0.917364
Target:  5'- gUGGcagagcgGGACuGCGuGGCgcUGUACCCGGGCu -3'
miRNA:   3'- -ACCa------CUUG-UGC-CCGa-ACGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 77505 0.66 0.917364
Target:  5'- gGGaagaUGAGCuccACGGGCUUGguCgUCGAGCc -3'
miRNA:   3'- aCC----ACUUG---UGCCCGAACguG-GGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 38505 0.66 0.917364
Target:  5'- aGGUGGccGCcCGGGC--GCGCCUGGuGCa -3'
miRNA:   3'- aCCACU--UGuGCCCGaaCGUGGGCU-UG- -5'
25783 5' -55.1 NC_005337.1 + 1434 0.66 0.917364
Target:  5'- gUGGUGuAUGCcGGCgaucgUGCACgUGAACg -3'
miRNA:   3'- -ACCACuUGUGcCCGa----ACGUGgGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 96223 0.66 0.911389
Target:  5'- cGGUGGug--GGGCUgagcgcGUACCUGGACg -3'
miRNA:   3'- aCCACUugugCCCGAa-----CGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 49268 0.66 0.911389
Target:  5'- cUGGUGGACAUcgugcaGGGCgUGaucuCCgCGAACg -3'
miRNA:   3'- -ACCACUUGUG------CCCGaACgu--GG-GCUUG- -5'
25783 5' -55.1 NC_005337.1 + 89791 0.66 0.905167
Target:  5'- cGGUG-ACGCGGcc--GCGCCuCGAACu -3'
miRNA:   3'- aCCACuUGUGCCcgaaCGUGG-GCUUG- -5'
25783 5' -55.1 NC_005337.1 + 38645 0.66 0.905167
Target:  5'- aUGGcGA--GCGGGCccGCGCCCacGGACg -3'
miRNA:   3'- -ACCaCUugUGCCCGaaCGUGGG--CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.