miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 5' -55.1 NC_005337.1 + 8850 0.68 0.830227
Target:  5'- ---cGAGCACgGGGCgacugGC-CCCGGGCa -3'
miRNA:   3'- accaCUUGUG-CCCGaa---CGuGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 860 0.68 0.821585
Target:  5'- cGG-GcAGCGCGGGC--GCGgCCGGGCg -3'
miRNA:   3'- aCCaC-UUGUGCCCGaaCGUgGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 58836 0.7 0.736817
Target:  5'- cGGUGA--ACGGGCUcG-ACCUGGACu -3'
miRNA:   3'- aCCACUugUGCCCGAaCgUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 18909 0.73 0.561213
Target:  5'- cUGGagcguCGCGGGCUUgagcgcGUACCCGAACa -3'
miRNA:   3'- -ACCacuu-GUGCCCGAA------CGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 38424 0.66 0.885051
Target:  5'- cUGGUGGACGaccagGGGCgcgucaucaCGCCCGAGg -3'
miRNA:   3'- -ACCACUUGUg----CCCGaac------GUGGGCUUg -5'
25783 5' -55.1 NC_005337.1 + 43661 0.67 0.846939
Target:  5'- gGGUGAACAggcacCGGGaaaucgUG-GCCCGGGCg -3'
miRNA:   3'- aCCACUUGU-----GCCCga----ACgUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 98131 0.68 0.821585
Target:  5'- gGGUGAGCAUGGaCccGCACgCCGcGCa -3'
miRNA:   3'- aCCACUUGUGCCcGaaCGUG-GGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 35046 0.73 0.550975
Target:  5'- cUGGccGACACGGGCUuuaUGCGCgCGAAg -3'
miRNA:   3'- -ACCacUUGUGCCCGA---ACGUGgGCUUg -5'
25783 5' -55.1 NC_005337.1 + 662 0.67 0.846939
Target:  5'- cGGUGAccuccugcagcaGCAgCGGGCccUUGCGCgCGGAg -3'
miRNA:   3'- aCCACU------------UGU-GCCCG--AACGUGgGCUUg -5'
25783 5' -55.1 NC_005337.1 + 119825 0.73 0.53068
Target:  5'- gGGUGGcaGCGCGGcGCUcgGUACCCGGc- -3'
miRNA:   3'- aCCACU--UGUGCC-CGAa-CGUGGGCUug -5'
25783 5' -55.1 NC_005337.1 + 133569 0.68 0.821585
Target:  5'- cGGc---CGCGGGCgUGCGCgCGAGCu -3'
miRNA:   3'- aCCacuuGUGCCCGaACGUGgGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 78639 0.68 0.830227
Target:  5'- aGGUGAGCGCggugGGGCUgaagaagGUGCC-GGGCg -3'
miRNA:   3'- aCCACUUGUG----CCCGAa------CGUGGgCUUG- -5'
25783 5' -55.1 NC_005337.1 + 13746 0.68 0.794617
Target:  5'- gUGGUGAGCGUGauCUccgcGCGCCCGAACg -3'
miRNA:   3'- -ACCACUUGUGCccGAa---CGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 18342 0.69 0.77586
Target:  5'- gUGGUccGAGCACGGGCccGUGgCCGAc- -3'
miRNA:   3'- -ACCA--CUUGUGCCCGaaCGUgGGCUug -5'
25783 5' -55.1 NC_005337.1 + 22755 0.7 0.706504
Target:  5'- cGGcgGAGCGCGGGCUcgguaUGCGgCUGuACa -3'
miRNA:   3'- aCCa-CUUGUGCCCGA-----ACGUgGGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 118203 0.71 0.654796
Target:  5'- cGGUGGGCGCGGaGC---CGCCCGAc- -3'
miRNA:   3'- aCCACUUGUGCC-CGaacGUGGGCUug -5'
25783 5' -55.1 NC_005337.1 + 50373 0.66 0.894707
Target:  5'- cGGgcccGGGCACGGGCgccuggcgcggggGCGCgCCGcGCg -3'
miRNA:   3'- aCCa---CUUGUGCCCGaa-----------CGUG-GGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 64260 0.66 0.885051
Target:  5'- cGGcucugGGACcCGGGC--GCGCCgGAGCa -3'
miRNA:   3'- aCCa----CUUGuGCCCGaaCGUGGgCUUG- -5'
25783 5' -55.1 NC_005337.1 + 95631 0.67 0.86284
Target:  5'- -cGUGGGCGCGGGCccGCucgccauCuuGAACa -3'
miRNA:   3'- acCACUUGUGCCCGaaCGu------GggCUUG- -5'
25783 5' -55.1 NC_005337.1 + 94060 0.67 0.847754
Target:  5'- aGGUuccGGGaACGGGCUggucccugcggccggGCACCCGAGg -3'
miRNA:   3'- aCCA---CUUgUGCCCGAa--------------CGUGGGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.