miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25792 5' -57.7 NC_005337.1 + 28280 1.08 0.00228
Target:  5'- gUCCGUGAUCACGAACCCCACGCCGGUg -3'
miRNA:   3'- -AGGCACUAGUGCUUGGGGUGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 108996 0.78 0.22756
Target:  5'- gCCGUGcgCGCGAACUCCAgCGCCGcGUu -3'
miRNA:   3'- aGGCACuaGUGCUUGGGGU-GCGGC-CA- -5'
25792 5' -57.7 NC_005337.1 + 106003 0.74 0.384857
Target:  5'- gUUCGUGAUCACGGACaCCACGCaCGu- -3'
miRNA:   3'- -AGGCACUAGUGCUUGgGGUGCG-GCca -5'
25792 5' -57.7 NC_005337.1 + 67161 0.74 0.410022
Target:  5'- aCCGUGAUgcgcaaccugCGCGAGCUCacgGCGCCGGg -3'
miRNA:   3'- aGGCACUA----------GUGCUUGGGg--UGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 68851 0.74 0.410022
Target:  5'- cUCCGcGA-CGCcccAGCCCCGCGCCGGa -3'
miRNA:   3'- -AGGCaCUaGUGc--UUGGGGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 102768 0.74 0.410022
Target:  5'- aCCGUGAgcaucCACGuGCUgaCCACGCCGGg -3'
miRNA:   3'- aGGCACUa----GUGCuUGG--GGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 50339 0.74 0.410022
Target:  5'- aUCCGcu-UCuccaaGAACCCCACGCCGGc -3'
miRNA:   3'- -AGGCacuAGug---CUUGGGGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 19763 0.73 0.427358
Target:  5'- uUCCGUGGacccCAUGGACCCgACGCCGc- -3'
miRNA:   3'- -AGGCACUa---GUGCUUGGGgUGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 115326 0.73 0.427358
Target:  5'- aCCGUGcUCGCGAcGCCCgGCGgCGGg -3'
miRNA:   3'- aGGCACuAGUGCU-UGGGgUGCgGCCa -5'
25792 5' -57.7 NC_005337.1 + 28639 0.73 0.430877
Target:  5'- gUCCG-GAgCACGAGCCCgacggugcagaacggCACGCCGGc -3'
miRNA:   3'- -AGGCaCUaGUGCUUGGG---------------GUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 80473 0.73 0.44512
Target:  5'- aCCGguc-CGCGAuCUCCACGCCGGUg -3'
miRNA:   3'- aGGCacuaGUGCUuGGGGUGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 54912 0.72 0.479031
Target:  5'- cUCCGUGAUCACGGacgugcaugcgugcACCUCGCuCuCGGUg -3'
miRNA:   3'- -AGGCACUAGUGCU--------------UGGGGUGcG-GCCA- -5'
25792 5' -57.7 NC_005337.1 + 74489 0.72 0.500738
Target:  5'- cUCGUGGUCGCGug-CCgGCGCCGGc -3'
miRNA:   3'- aGGCACUAGUGCuugGGgUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 95628 0.72 0.500738
Target:  5'- gUCCGUGggCGCGGGCCCgCuCGCCa-- -3'
miRNA:   3'- -AGGCACuaGUGCUUGGG-GuGCGGcca -5'
25792 5' -57.7 NC_005337.1 + 13289 0.72 0.510311
Target:  5'- gUCCGUGuUCGcCGGACCCaagcaGUGCCGGUg -3'
miRNA:   3'- -AGGCACuAGU-GCUUGGGg----UGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 90337 0.71 0.528703
Target:  5'- gUCCGUGGUCACGAgcagcggccagcgGCCgUUACGCgCGGc -3'
miRNA:   3'- -AGGCACUAGUGCU-------------UGG-GGUGCG-GCCa -5'
25792 5' -57.7 NC_005337.1 + 51500 0.71 0.539463
Target:  5'- cCCGUcGUCA---ACCUCACGCCGGUg -3'
miRNA:   3'- aGGCAcUAGUgcuUGGGGUGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 5801 0.71 0.549309
Target:  5'- cCCGcGAgcaCGCGGucUCCCGCGCCGGUc -3'
miRNA:   3'- aGGCaCUa--GUGCUu-GGGGUGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 53675 0.71 0.55921
Target:  5'- -gCGUGcUCGCuGGACCCUugaaGCGCCGGg -3'
miRNA:   3'- agGCACuAGUG-CUUGGGG----UGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 23128 0.71 0.55921
Target:  5'- gCCGUGGUCGCGGccaugcGCCCCuucCuCCGGg -3'
miRNA:   3'- aGGCACUAGUGCU------UGGGGu--GcGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.