miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25792 5' -57.7 NC_005337.1 + 4737 0.7 0.589183
Target:  5'- gUCGaGAUCACGGACgCUCGCGCCGc- -3'
miRNA:   3'- aGGCaCUAGUGCUUG-GGGUGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 5801 0.71 0.549309
Target:  5'- cCCGcGAgcaCGCGGucUCCCGCGCCGGUc -3'
miRNA:   3'- aGGCaCUa--GUGCUu-GGGGUGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 11868 0.68 0.70587
Target:  5'- cCCGUGAgcgaggcgcugccCACGuaccacuGCCCCGCGuuGGa -3'
miRNA:   3'- aGGCACUa------------GUGCu------UGGGGUGCggCCa -5'
25792 5' -57.7 NC_005337.1 + 12274 0.66 0.829453
Target:  5'- gCCG-GGUCGC--ACCCCGCGCgcaGGa -3'
miRNA:   3'- aGGCaCUAGUGcuUGGGGUGCGg--CCa -5'
25792 5' -57.7 NC_005337.1 + 13289 0.72 0.510311
Target:  5'- gUCCGUGuUCGcCGGACCCaagcaGUGCCGGUg -3'
miRNA:   3'- -AGGCACuAGU-GCUUGGGg----UGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 13895 0.68 0.699923
Target:  5'- -aCGUGccgCACGAGCCggcaggCGCGCCGGg -3'
miRNA:   3'- agGCACua-GUGCUUGGg-----GUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 19763 0.73 0.427358
Target:  5'- uUCCGUGGacccCAUGGACCCgACGCCGc- -3'
miRNA:   3'- -AGGCACUa---GUGCUUGGGgUGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 21685 0.66 0.837657
Target:  5'- aCC-UGGUCACGAcguuuCCgCACGCCGuGg -3'
miRNA:   3'- aGGcACUAGUGCUu----GGgGUGCGGC-Ca -5'
25792 5' -57.7 NC_005337.1 + 23049 0.69 0.689967
Target:  5'- gUUCGUGA-CGCacGCCgCGCGCCGGa -3'
miRNA:   3'- -AGGCACUaGUGcuUGGgGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 23128 0.71 0.55921
Target:  5'- gCCGUGGUCGCGGccaugcGCCCCuucCuCCGGg -3'
miRNA:   3'- aGGCACUAGUGCU------UGGGGu--GcGGCCa -5'
25792 5' -57.7 NC_005337.1 + 23763 0.68 0.739102
Target:  5'- gCCGUGuucaccacgCGCGAGCgCCACGUCGa- -3'
miRNA:   3'- aGGCACua-------GUGCUUGgGGUGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 28280 1.08 0.00228
Target:  5'- gUCCGUGAUCACGAACCCCACGCCGGUg -3'
miRNA:   3'- -AGGCACUAGUGCUUGGGGUGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 28639 0.73 0.430877
Target:  5'- gUCCG-GAgCACGAGCCCgacggugcagaacggCACGCCGGc -3'
miRNA:   3'- -AGGCaCUaGUGCUUGGG---------------GUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 30857 0.67 0.803821
Target:  5'- cUCgGUGAcCACaAGCCCCAgcUGCUGGg -3'
miRNA:   3'- -AGgCACUaGUGcUUGGGGU--GCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 30893 0.67 0.766629
Target:  5'- cUUCG-GGUCguagcgacggcagGCGAGCCCUGCGCCGa- -3'
miRNA:   3'- -AGGCaCUAG-------------UGCUUGGGGUGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 34049 0.68 0.748692
Target:  5'- aCCGcGAUCACGcgcACgCgGCGCCGGc -3'
miRNA:   3'- aGGCaCUAGUGCu--UGgGgUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 35012 0.68 0.699923
Target:  5'- gCCGUGc---CGAACCCCGCGUCGc- -3'
miRNA:   3'- aGGCACuaguGCUUGGGGUGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 36242 0.66 0.845678
Target:  5'- cCCGg----ACGAACCCCAgccCGUCGGUg -3'
miRNA:   3'- aGGCacuagUGCUUGGGGU---GCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 36350 0.68 0.699923
Target:  5'- aCCGccAUCACGcccacgggcggcGGCCCCugGCUGGa -3'
miRNA:   3'- aGGCacUAGUGC------------UUGGGGugCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 37249 0.66 0.812528
Target:  5'- -aCGcGGUCAgcgucuugcCGAACCCgCACGCCaGGUg -3'
miRNA:   3'- agGCaCUAGU---------GCUUGGG-GUGCGG-CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.