miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25794 3' -55.5 NC_005337.1 + 30538 1.12 0.001781
Target:  5'- aGCCACGGCCUCUUCGUAGACGGACUCg -3'
miRNA:   3'- -CGGUGCCGGAGAAGCAUCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 52129 0.81 0.192513
Target:  5'- gGCCAUGGCCU--UCGUGGACGcGugUCg -3'
miRNA:   3'- -CGGUGCCGGAgaAGCAUCUGC-CugAG- -5'
25794 3' -55.5 NC_005337.1 + 20770 0.81 0.212716
Target:  5'- gGCCGCGGCCacgcgCUUCGcggGGACGGGCg- -3'
miRNA:   3'- -CGGUGCCGGa----GAAGCa--UCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 47966 0.8 0.229041
Target:  5'- aCCgACGGCUUCUUCGUGGACGGGg-- -3'
miRNA:   3'- cGG-UGCCGGAGAAGCAUCUGCCUgag -5'
25794 3' -55.5 NC_005337.1 + 100453 0.8 0.234714
Target:  5'- -aCACGGCC-CUUCGc-GACGGACUCa -3'
miRNA:   3'- cgGUGCCGGaGAAGCauCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 43202 0.8 0.252441
Target:  5'- gGCCAaGaGCCUCUUCugGGACGGGCUCg -3'
miRNA:   3'- -CGGUgC-CGGAGAAGcaUCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 75937 0.77 0.339767
Target:  5'- gGCCACGGUCUCgUCGUacuccugcuucgagAGcACGGACUUg -3'
miRNA:   3'- -CGGUGCCGGAGaAGCA--------------UC-UGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 2832 0.75 0.434277
Target:  5'- gGCCgagcGCGGCCUCcgCGgAGACGGAgUCc -3'
miRNA:   3'- -CGG----UGCCGGAGaaGCaUCUGCCUgAG- -5'
25794 3' -55.5 NC_005337.1 + 88215 0.74 0.509656
Target:  5'- cCC-CGGCCUCcUCGaggAGGCGGGCUg -3'
miRNA:   3'- cGGuGCCGGAGaAGCa--UCUGCCUGAg -5'
25794 3' -55.5 NC_005337.1 + 97618 0.74 0.519478
Target:  5'- gGCCGCGGCCU--UCGcGGACgGGACg- -3'
miRNA:   3'- -CGGUGCCGGAgaAGCaUCUG-CCUGag -5'
25794 3' -55.5 NC_005337.1 + 3648 0.71 0.641382
Target:  5'- cGCCGCGGCCUCgUCGUccgcgcAGuCGGGg-- -3'
miRNA:   3'- -CGGUGCCGGAGaAGCA------UCuGCCUgag -5'
25794 3' -55.5 NC_005337.1 + 110746 0.71 0.650644
Target:  5'- gGCCAUGGCCcggaugagccucuUCUUCGagcccGGAUGGACa- -3'
miRNA:   3'- -CGGUGCCGG-------------AGAAGCa----UCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 68294 0.71 0.661947
Target:  5'- -gCACGGCCUCgcaccagAGGCGGuACUCg -3'
miRNA:   3'- cgGUGCCGGAGaagca--UCUGCC-UGAG- -5'
25794 3' -55.5 NC_005337.1 + 99474 0.71 0.669126
Target:  5'- cGCgAgGGCgUCUUCGUGGccgugcggcgcuacGCGGACUg -3'
miRNA:   3'- -CGgUgCCGgAGAAGCAUC--------------UGCCUGAg -5'
25794 3' -55.5 NC_005337.1 + 108412 0.71 0.672198
Target:  5'- aUCACGGCCaaCUcCGUGuACGGGCUCa -3'
miRNA:   3'- cGGUGCCGGa-GAaGCAUcUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 35742 0.71 0.672198
Target:  5'- aGCaCGCGGCCg--UCG--GGCGGGCUCc -3'
miRNA:   3'- -CG-GUGCCGGagaAGCauCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 71537 0.71 0.682416
Target:  5'- -aCACGGCCgCgaagUCGUAcACGGACUUc -3'
miRNA:   3'- cgGUGCCGGaGa---AGCAUcUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 51917 0.71 0.682416
Target:  5'- uGUCGCGGCCgacCUUCGgc-ACGGGCaUCg -3'
miRNA:   3'- -CGGUGCCGGa--GAAGCaucUGCCUG-AG- -5'
25794 3' -55.5 NC_005337.1 + 46497 0.7 0.702716
Target:  5'- cGCCuuGGCCUCUaUGUccGCGGugUCc -3'
miRNA:   3'- -CGGugCCGGAGAaGCAucUGCCugAG- -5'
25794 3' -55.5 NC_005337.1 + 43453 0.7 0.732691
Target:  5'- cCCGCGGUgU--UCGUGGACGGGUUCa -3'
miRNA:   3'- cGGUGCCGgAgaAGCAUCUGCCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.