miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25794 3' -55.5 NC_005337.1 + 2832 0.75 0.434277
Target:  5'- gGCCgagcGCGGCCUCcgCGgAGACGGAgUCc -3'
miRNA:   3'- -CGG----UGCCGGAGaaGCaUCUGCCUgAG- -5'
25794 3' -55.5 NC_005337.1 + 3648 0.71 0.641382
Target:  5'- cGCCGCGGCCUCgUCGUccgcgcAGuCGGGg-- -3'
miRNA:   3'- -CGGUGCCGGAGaAGCA------UCuGCCUgag -5'
25794 3' -55.5 NC_005337.1 + 16659 0.66 0.900694
Target:  5'- cGCgGCGGCCgg-UCG-AGACGaGGgUCg -3'
miRNA:   3'- -CGgUGCCGGagaAGCaUCUGC-CUgAG- -5'
25794 3' -55.5 NC_005337.1 + 18732 0.66 0.904504
Target:  5'- cGCgCugGcGCCUCUgaccggaacaugcCGUAcacGAUGGACUCg -3'
miRNA:   3'- -CG-GugC-CGGAGAa------------GCAU---CUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 20770 0.81 0.212716
Target:  5'- gGCCGCGGCCacgcgCUUCGcggGGACGGGCg- -3'
miRNA:   3'- -CGGUGCCGGa----GAAGCa--UCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 21405 0.67 0.850212
Target:  5'- gGCCGCGGCaucgUCgaCGUGGgccGCGGccaGCUCg -3'
miRNA:   3'- -CGGUGCCGg---AGaaGCAUC---UGCC---UGAG- -5'
25794 3' -55.5 NC_005337.1 + 21814 0.66 0.918886
Target:  5'- cGCCGCaG-CUCUUCGUGcGCGcGCUCu -3'
miRNA:   3'- -CGGUGcCgGAGAAGCAUcUGCcUGAG- -5'
25794 3' -55.5 NC_005337.1 + 25043 0.66 0.918886
Target:  5'- cGCCACGGgcCCUCcUCGcAGACGuACg- -3'
miRNA:   3'- -CGGUGCC--GGAGaAGCaUCUGCcUGag -5'
25794 3' -55.5 NC_005337.1 + 25674 0.69 0.761871
Target:  5'- cGCCGCGGCC-C-UCGaAGGCGGcgUCg -3'
miRNA:   3'- -CGGUGCCGGaGaAGCaUCUGCCugAG- -5'
25794 3' -55.5 NC_005337.1 + 30538 1.12 0.001781
Target:  5'- aGCCACGGCCUCUUCGUAGACGGACUCg -3'
miRNA:   3'- -CGGUGCCGGAGAAGCAUCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 32196 0.66 0.918886
Target:  5'- gGCCACcgagauguugcaGGCCUCgaagaggUCGgAGGCGuGCUCc -3'
miRNA:   3'- -CGGUG------------CCGGAGa------AGCaUCUGCcUGAG- -5'
25794 3' -55.5 NC_005337.1 + 34613 0.7 0.742518
Target:  5'- gGCCGCGGaCCUCcugcuccUCGUugaAGACGGcgggcgucucGCUCa -3'
miRNA:   3'- -CGGUGCC-GGAGa------AGCA---UCUGCC----------UGAG- -5'
25794 3' -55.5 NC_005337.1 + 35223 0.66 0.913061
Target:  5'- uGCgACGGCgUgagCGU-GACGGAUUCg -3'
miRNA:   3'- -CGgUGCCGgAgaaGCAuCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 35336 0.68 0.833898
Target:  5'- gGCCugGGCCguguUCggugagUCGUcggacggcuggcGGGCGGACg- -3'
miRNA:   3'- -CGGugCCGG----AGa-----AGCA------------UCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 35742 0.71 0.672198
Target:  5'- aGCaCGCGGCCg--UCG--GGCGGGCUCc -3'
miRNA:   3'- -CG-GUGCCGGagaAGCauCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 37645 0.67 0.873166
Target:  5'- cGCCGCGGUCgggCUUCaccgcGAUGGGCa- -3'
miRNA:   3'- -CGGUGCCGGa--GAAGcau--CUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 41638 0.68 0.816842
Target:  5'- cGCC-CGGCgUCUcCGUGGAuCGGGaUCg -3'
miRNA:   3'- -CGGuGCCGgAGAaGCAUCU-GCCUgAG- -5'
25794 3' -55.5 NC_005337.1 + 41777 0.68 0.825459
Target:  5'- aGCCGuCGGCCuUCUUCGgcaucaccAGGuCGGcCUCg -3'
miRNA:   3'- -CGGU-GCCGG-AGAAGCa-------UCU-GCCuGAG- -5'
25794 3' -55.5 NC_005337.1 + 43202 0.8 0.252441
Target:  5'- gGCCAaGaGCCUCUUCugGGACGGGCUCg -3'
miRNA:   3'- -CGGUgC-CGGAGAAGcaUCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 43453 0.7 0.732691
Target:  5'- cCCGCGGUgU--UCGUGGACGGGUUCa -3'
miRNA:   3'- cGGUGCCGgAgaAGCAUCUGCCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.