miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25794 5' -60.1 NC_005337.1 + 59179 0.71 0.391265
Target:  5'- --cAGGCCGUGCGUCGGGGcaccGGCGa-- -3'
miRNA:   3'- accUCCGGCACGCGGUCCU----CCGUaac -5'
25794 5' -60.1 NC_005337.1 + 60571 0.66 0.647619
Target:  5'- aGGucGCUGUccgggaagaaguuGCGCCGGaAGGCGUUGu -3'
miRNA:   3'- aCCucCGGCA-------------CGCGGUCcUCCGUAAC- -5'
25794 5' -60.1 NC_005337.1 + 65991 0.69 0.508678
Target:  5'- gUGcGAGGCCGUGCGUCccgugGGcGAGcGCGUg- -3'
miRNA:   3'- -AC-CUCCGGCACGCGG-----UC-CUC-CGUAac -5'
25794 5' -60.1 NC_005337.1 + 69367 0.67 0.638484
Target:  5'- cGGGccGGCCGcuaGCGCCAGGuccgccucugugAGGCGg-- -3'
miRNA:   3'- aCCU--CCGGCa--CGCGGUCC------------UCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 74177 0.68 0.528103
Target:  5'- gGGAGGCgCGcucGgGCCGGGAgucGGCGUUc -3'
miRNA:   3'- aCCUCCG-GCa--CgCGGUCCU---CCGUAAc -5'
25794 5' -60.1 NC_005337.1 + 82518 0.75 0.220371
Target:  5'- gGGGcGGCCGUccaGCGCCAGGgcGGGCAg-- -3'
miRNA:   3'- aCCU-CCGGCA---CGCGGUCC--UCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 84046 0.66 0.668887
Target:  5'- cGGAGGCgCGcacGaCGCCcucgGGGAGGCGc-- -3'
miRNA:   3'- aCCUCCG-GCa--C-GCGG----UCCUCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 88263 0.66 0.658771
Target:  5'- cGGcGcGCCGgcggGCGCCGcGGAGGaCAUg- -3'
miRNA:   3'- aCCuC-CGGCa---CGCGGU-CCUCC-GUAac -5'
25794 5' -60.1 NC_005337.1 + 88779 0.7 0.425538
Target:  5'- gUGGAGGCCuucgacGUGCGUCcGGAGaGCGg-- -3'
miRNA:   3'- -ACCUCCGG------CACGCGGuCCUC-CGUaac -5'
25794 5' -60.1 NC_005337.1 + 90441 0.76 0.199815
Target:  5'- aGGAGGUCGUGCGC--GGAGGCcaUGa -3'
miRNA:   3'- aCCUCCGGCACGCGguCCUCCGuaAC- -5'
25794 5' -60.1 NC_005337.1 + 93274 0.67 0.608035
Target:  5'- gGcGAGGCCGggggugcgucgGCGCCuGGuGGCGg-- -3'
miRNA:   3'- aC-CUCCGGCa----------CGCGGuCCuCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 93829 0.66 0.648634
Target:  5'- cGGcgucgucaaGGGCCGUGCGCUccggaAGGAGcGCc--- -3'
miRNA:   3'- aCC---------UCCGGCACGCGG-----UCCUC-CGuaac -5'
25794 5' -60.1 NC_005337.1 + 97799 0.72 0.328347
Target:  5'- cGGccAGGCCGUGCGgCAGGuGGUg--- -3'
miRNA:   3'- aCC--UCCGGCACGCgGUCCuCCGuaac -5'
25794 5' -60.1 NC_005337.1 + 101527 0.66 0.689023
Target:  5'- cUGGAGGCCGUGgacgugaccgcCGCCAGcGuGGa---- -3'
miRNA:   3'- -ACCUCCGGCAC-----------GCGGUC-CuCCguaac -5'
25794 5' -60.1 NC_005337.1 + 102846 0.74 0.254559
Target:  5'- aUGGucGGGCCGcGCGCCAGGaAGuGCAUg- -3'
miRNA:   3'- -ACC--UCCGGCaCGCGGUCC-UC-CGUAac -5'
25794 5' -60.1 NC_005337.1 + 107067 0.71 0.366769
Target:  5'- cGGcGGCgGcGCGCCAGGGGGUg--- -3'
miRNA:   3'- aCCuCCGgCaCGCGGUCCUCCGuaac -5'
25794 5' -60.1 NC_005337.1 + 116131 0.66 0.668887
Target:  5'- gUGGA-GCUGcGCGCCuGGGGGCc--- -3'
miRNA:   3'- -ACCUcCGGCaCGCGGuCCUCCGuaac -5'
25794 5' -60.1 NC_005337.1 + 120616 0.68 0.546806
Target:  5'- aGGAGGCCGgcaagacggGCGUCacgaucgAGGAGGUg--- -3'
miRNA:   3'- aCCUCCGGCa--------CGCGG-------UCCUCCGuaac -5'
25794 5' -60.1 NC_005337.1 + 123697 0.66 0.668887
Target:  5'- cGGAcGCCGUGCGgCGGcuGGGCAc-- -3'
miRNA:   3'- aCCUcCGGCACGCgGUCc-UCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 124509 0.66 0.668887
Target:  5'- aGGAGGCCG-GUGCCAacccGGCGc-- -3'
miRNA:   3'- aCCUCCGGCaCGCGGUccu-CCGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.