miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25794 5' -60.1 NC_005337.1 + 1017 0.75 0.225238
Target:  5'- cUGGAGGCCGUcgaauuucacuuuGCG-CGGGAGGCGg-- -3'
miRNA:   3'- -ACCUCCGGCA-------------CGCgGUCCUCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 1017 0.75 0.225238
Target:  5'- cUGGAGGCCGUcgaauuucacuuuGCG-CGGGAGGCGg-- -3'
miRNA:   3'- -ACCUCCGGCA-------------CGCgGUCCUCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 9758 0.68 0.528103
Target:  5'- cGucGGCCG-GCGCCGGGuuGGCAc-- -3'
miRNA:   3'- aCcuCCGGCaCGCGGUCCu-CCGUaac -5'
25794 5' -60.1 NC_005337.1 + 10409 0.68 0.557731
Target:  5'- gUGGAGGUgCGgcUGCGcCCAGGAGGaCGc-- -3'
miRNA:   3'- -ACCUCCG-GC--ACGC-GGUCCUCC-GUaac -5'
25794 5' -60.1 NC_005337.1 + 11389 0.69 0.515444
Target:  5'- cGGcGGGCUGaUGCGCCAGGgccccggguuccgcAGGCGc-- -3'
miRNA:   3'- aCC-UCCGGC-ACGCGGUCC--------------UCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 25800 0.66 0.678974
Target:  5'- -cGAuGGCCGUGCaGCUcuuggcGGAGGCGUa- -3'
miRNA:   3'- acCU-CCGGCACG-CGGu-----CCUCCGUAac -5'
25794 5' -60.1 NC_005337.1 + 28928 0.66 0.693029
Target:  5'- cGGAGGCCuucacgccgacagGCG-CAGGAGGuUGUUGg -3'
miRNA:   3'- aCCUCCGGca-----------CGCgGUCCUCC-GUAAC- -5'
25794 5' -60.1 NC_005337.1 + 29544 0.67 0.597911
Target:  5'- cGGcGGCCGUGCacccacucgcuGCuCAGGuGGCAc-- -3'
miRNA:   3'- aCCuCCGGCACG-----------CG-GUCCuCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 30577 1.07 0.001242
Target:  5'- gUGGAGGCCGUGCGCCAGGAGGCAUUGc -3'
miRNA:   3'- -ACCUCCGGCACGCGGUCCUCCGUAAC- -5'
25794 5' -60.1 NC_005337.1 + 30651 0.66 0.658771
Target:  5'- gGGAGGCUGccGCGUCGcgggccuuccGGGGGUAUa- -3'
miRNA:   3'- aCCUCCGGCa-CGCGGU----------CCUCCGUAac -5'
25794 5' -60.1 NC_005337.1 + 31268 0.76 0.194944
Target:  5'- cGGAuGCgGUGCGCCAgGGAGGCGa-- -3'
miRNA:   3'- aCCUcCGgCACGCGGU-CCUCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 31912 0.69 0.480129
Target:  5'- cGGuGGCCagGUGCGCgGccucGGGGGCAUg- -3'
miRNA:   3'- aCCuCCGG--CACGCGgU----CCUCCGUAac -5'
25794 5' -60.1 NC_005337.1 + 32228 0.69 0.489561
Target:  5'- cGGAGG-CGUGCuCCGGGAagcaGGCGUa- -3'
miRNA:   3'- aCCUCCgGCACGcGGUCCU----CCGUAac -5'
25794 5' -60.1 NC_005337.1 + 33686 0.66 0.68802
Target:  5'- -cGAGGCCGgcggGCGCCAccuccucgaagguGGuGGCGc-- -3'
miRNA:   3'- acCUCCGGCa---CGCGGU-------------CCuCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 35265 0.66 0.648634
Target:  5'- cGcAGGCCGcGCGCaccuCGGGGGGCGg-- -3'
miRNA:   3'- aCcUCCGGCaCGCG----GUCCUCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 35964 0.66 0.648634
Target:  5'- gGGAcGCCGccGCGgCAGGGGGUAa-- -3'
miRNA:   3'- aCCUcCGGCa-CGCgGUCCUCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 38572 0.69 0.480129
Target:  5'- cGGAcuCCGUGCacGCCaAGGAGGCGUg- -3'
miRNA:   3'- aCCUccGGCACG--CGG-UCCUCCGUAac -5'
25794 5' -60.1 NC_005337.1 + 40538 0.69 0.499079
Target:  5'- aGGAGGCU-UGCGCCGgcgggucgcuGGAGGCc--- -3'
miRNA:   3'- aCCUCCGGcACGCGGU----------CCUCCGuaac -5'
25794 5' -60.1 NC_005337.1 + 41078 0.66 0.668887
Target:  5'- aGGAGGUCGUGCGacauccaCGGGAaguugaGGUAc-- -3'
miRNA:   3'- aCCUCCGGCACGCg------GUCCU------CCGUaac -5'
25794 5' -60.1 NC_005337.1 + 41603 0.66 0.699025
Target:  5'- aGGGcguGGUCGUG-GCgaAGGAGGCcgUGg -3'
miRNA:   3'- aCCU---CCGGCACgCGg-UCCUCCGuaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.