Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25794 | 5' | -60.1 | NC_005337.1 | + | 30577 | 1.07 | 0.001242 |
Target: 5'- gUGGAGGCCGUGCGCCAGGAGGCAUUGc -3' miRNA: 3'- -ACCUCCGGCACGCGGUCCUCCGUAAC- -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 31268 | 0.76 | 0.194944 |
Target: 5'- cGGAuGCgGUGCGCCAgGGAGGCGa-- -3' miRNA: 3'- aCCUcCGgCACGCGGU-CCUCCGUaac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 90441 | 0.76 | 0.199815 |
Target: 5'- aGGAGGUCGUGCGC--GGAGGCcaUGa -3' miRNA: 3'- aCCUCCGGCACGCGguCCUCCGuaAC- -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 82518 | 0.75 | 0.220371 |
Target: 5'- gGGGcGGCCGUccaGCGCCAGGgcGGGCAg-- -3' miRNA: 3'- aCCU-CCGGCA---CGCGGUCC--UCCGUaac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 1017 | 0.75 | 0.225238 |
Target: 5'- cUGGAGGCCGUcgaauuucacuuuGCG-CGGGAGGCGg-- -3' miRNA: 3'- -ACCUCCGGCA-------------CGCgGUCCUCCGUaac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 1017 | 0.75 | 0.225238 |
Target: 5'- cUGGAGGCCGUcgaauuucacuuuGCG-CGGGAGGCGg-- -3' miRNA: 3'- -ACCUCCGGCA-------------CGCgGUCCUCCGUaac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 102846 | 0.74 | 0.254559 |
Target: 5'- aUGGucGGGCCGcGCGCCAGGaAGuGCAUg- -3' miRNA: 3'- -ACC--UCCGGCaCGCGGUCC-UC-CGUAac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 130172 | 0.73 | 0.286277 |
Target: 5'- cGGAGGCCGUGCGCgC-GGAGcacGCGg-- -3' miRNA: 3'- aCCUCCGGCACGCG-GuCCUC---CGUaac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 97799 | 0.72 | 0.328347 |
Target: 5'- cGGccAGGCCGUGCGgCAGGuGGUg--- -3' miRNA: 3'- aCC--UCCGGCACGCgGUCCuCCGuaac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 107067 | 0.71 | 0.366769 |
Target: 5'- cGGcGGCgGcGCGCCAGGGGGUg--- -3' miRNA: 3'- aCCuCCGgCaCGCGGUCCUCCGuaac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 59179 | 0.71 | 0.391265 |
Target: 5'- --cAGGCCGUGCGUCGGGGcaccGGCGa-- -3' miRNA: 3'- accUCCGGCACGCGGUCCU----CCGUaac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 88779 | 0.7 | 0.425538 |
Target: 5'- gUGGAGGCCuucgacGUGCGUCcGGAGaGCGg-- -3' miRNA: 3'- -ACCUCCGG------CACGCGGuCCUC-CGUaac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 124602 | 0.7 | 0.443332 |
Target: 5'- cGGAuGCCGaacgcgugGCGCU-GGAGGCAUUGc -3' miRNA: 3'- aCCUcCGGCa-------CGCGGuCCUCCGUAAC- -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 38572 | 0.69 | 0.480129 |
Target: 5'- cGGAcuCCGUGCacGCCaAGGAGGCGUg- -3' miRNA: 3'- aCCUccGGCACG--CGG-UCCUCCGUAac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 31912 | 0.69 | 0.480129 |
Target: 5'- cGGuGGCCagGUGCGCgGccucGGGGGCAUg- -3' miRNA: 3'- aCCuCCGG--CACGCGgU----CCUCCGUAac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 32228 | 0.69 | 0.489561 |
Target: 5'- cGGAGG-CGUGCuCCGGGAagcaGGCGUa- -3' miRNA: 3'- aCCUCCgGCACGcGGUCCU----CCGUAac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 40538 | 0.69 | 0.499079 |
Target: 5'- aGGAGGCU-UGCGCCGgcgggucgcuGGAGGCc--- -3' miRNA: 3'- aCCUCCGGcACGCGGU----------CCUCCGuaac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 65991 | 0.69 | 0.508678 |
Target: 5'- gUGcGAGGCCGUGCGUCccgugGGcGAGcGCGUg- -3' miRNA: 3'- -AC-CUCCGGCACGCGG-----UC-CUC-CGUAac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 11389 | 0.69 | 0.515444 |
Target: 5'- cGGcGGGCUGaUGCGCCAGGgccccggguuccgcAGGCGc-- -3' miRNA: 3'- aCC-UCCGGC-ACGCGGUCC--------------UCCGUaac -5' |
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25794 | 5' | -60.1 | NC_005337.1 | + | 9758 | 0.68 | 0.528103 |
Target: 5'- cGucGGCCG-GCGCCGGGuuGGCAc-- -3' miRNA: 3'- aCcuCCGGCaCGCGGUCCu-CCGUaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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