miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 3' -59.6 NC_005337.1 + 14187 0.67 0.675622
Target:  5'- gCGuGUCCGUGUCG--CAGGGGUCCGCc -3'
miRNA:   3'- -GCuCAGGUGCGGUagGUCUCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 15548 0.67 0.692468
Target:  5'- uCGucUCCAUGCCGUCCAccggcuugaacggcGAGGCggagCCGUc -3'
miRNA:   3'- -GCucAGGUGCGGUAGGU--------------CUCCG----GGCG- -5'
25797 3' -59.6 NC_005337.1 + 16047 0.66 0.734363
Target:  5'- uCGGGcUCCGCGCacugcaugaugaCGUCgGGcGGCuCCGCg -3'
miRNA:   3'- -GCUC-AGGUGCG------------GUAGgUCuCCG-GGCG- -5'
25797 3' -59.6 NC_005337.1 + 16108 0.69 0.556063
Target:  5'- aCGGGUCCgccgcgGCGCCGucaaccUCCAuGGcGGCaCCGCa -3'
miRNA:   3'- -GCUCAGG------UGCGGU------AGGU-CU-CCG-GGCG- -5'
25797 3' -59.6 NC_005337.1 + 17568 0.69 0.555082
Target:  5'- gGAGUgcuugugCCGCGCCAUugcggCCGGcucGCCCGCg -3'
miRNA:   3'- gCUCA-------GGUGCGGUA-----GGUCuc-CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 18323 0.72 0.391935
Target:  5'- gCGcGUCCAUgGCCAUCUGGugguccgagcacGGGCCCGUg -3'
miRNA:   3'- -GCuCAGGUG-CGGUAGGUC------------UCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 18470 0.67 0.685546
Target:  5'- gGAGUCCgcGCGCCAugUCCAGcaccGGcGUCCaGCc -3'
miRNA:   3'- gCUCAGG--UGCGGU--AGGUC----UC-CGGG-CG- -5'
25797 3' -59.6 NC_005337.1 + 19052 0.79 0.146623
Target:  5'- gGGGUCCGCGCCcaucUUCAGcAGcGCCCGCa -3'
miRNA:   3'- gCUCAGGUGCGGu---AGGUC-UC-CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 19579 0.67 0.706239
Target:  5'- uGAG-CCGCGCgaggaucuccacugCGUCCAGcggagaggcggccucGaGGCCCGCg -3'
miRNA:   3'- gCUCaGGUGCG--------------GUAGGUC---------------U-CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 20112 0.66 0.724735
Target:  5'- gCGAGagCGCGUCcUCCaccgAGAGGUCgGCg -3'
miRNA:   3'- -GCUCagGUGCGGuAGG----UCUCCGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 23503 0.73 0.329754
Target:  5'- -cGGUCCAUGuCCAUCCGG-GGCUCGa -3'
miRNA:   3'- gcUCAGGUGC-GGUAGGUCuCCGGGCg -5'
25797 3' -59.6 NC_005337.1 + 23645 0.66 0.715031
Target:  5'- aCGAGa--GCGUCGUCCGGAGGgaccucgacCCCGg -3'
miRNA:   3'- -GCUCaggUGCGGUAGGUCUCC---------GGGCg -5'
25797 3' -59.6 NC_005337.1 + 25285 0.67 0.65568
Target:  5'- gGAGUUCGCGCgCAcggCgGGcGGGCCgCGCg -3'
miRNA:   3'- gCUCAGGUGCG-GUa--GgUC-UCCGG-GCG- -5'
25797 3' -59.6 NC_005337.1 + 25707 0.7 0.525905
Target:  5'- gCGGGUuguccggCCGCGCCG-CCAGcgucAGGCgCGCg -3'
miRNA:   3'- -GCUCA-------GGUGCGGUaGGUC----UCCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 26438 0.66 0.719892
Target:  5'- uCGucUCCACGCCGUagugcucCCAGAGGUacagacagaggcaCGCg -3'
miRNA:   3'- -GCucAGGUGCGGUA-------GGUCUCCGg------------GCG- -5'
25797 3' -59.6 NC_005337.1 + 27698 0.67 0.695428
Target:  5'- gCGcGUCCACGCCA-CCGGcuGCacgaucucCCGCa -3'
miRNA:   3'- -GCuCAGGUGCGGUaGGUCucCG--------GGCG- -5'
25797 3' -59.6 NC_005337.1 + 29161 0.73 0.355265
Target:  5'- gGAGcgCCGCGUCGUCCAGcuccggagacgcggcGGcGCCCGUg -3'
miRNA:   3'- gCUCa-GGUGCGGUAGGUC---------------UC-CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 29350 0.68 0.605641
Target:  5'- gGAGUCCAUGCgCGUgagcaccggCgAGAGGCUCaGCu -3'
miRNA:   3'- gCUCAGGUGCG-GUA---------GgUCUCCGGG-CG- -5'
25797 3' -59.6 NC_005337.1 + 29973 0.69 0.556063
Target:  5'- aGAGcgccgCCGCGCCcUCgCGGAccGCCCGCg -3'
miRNA:   3'- gCUCa----GGUGCGGuAG-GUCUc-CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 30601 0.69 0.546274
Target:  5'- -aGGUCCGCGCuCAggCAGGagauGGCCUGCu -3'
miRNA:   3'- gcUCAGGUGCG-GUagGUCU----CCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.