miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 3' -59.6 NC_005337.1 + 1156 0.7 0.488888
Target:  5'- gGGGagCGCGCCGg-CGGAgcGGCCCGCu -3'
miRNA:   3'- gCUCagGUGCGGUagGUCU--CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 1253 0.69 0.546274
Target:  5'- aCGAG-CCGgGCgAUCagccgcaGGAuGGCCCGCg -3'
miRNA:   3'- -GCUCaGGUgCGgUAGg------UCU-CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 1290 0.67 0.695428
Target:  5'- gCGGGUCgGCGggcagguuguCCAUCCggcggcgcaGGAGGUCCaGCg -3'
miRNA:   3'- -GCUCAGgUGC----------GGUAGG---------UCUCCGGG-CG- -5'
25797 3' -59.6 NC_005337.1 + 1713 0.67 0.664666
Target:  5'- gCGAGgcgCCGuacCGCaCGUUCAGcgcgucgauguccAGGCCCGCc -3'
miRNA:   3'- -GCUCa--GGU---GCG-GUAGGUC-------------UCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 2492 0.69 0.539455
Target:  5'- uGAcGUCCGCGCCGaggcucagcagcugCCgcaccucGGAGGCCCGg -3'
miRNA:   3'- gCU-CAGGUGCGGUa-------------GG-------UCUCCGGGCg -5'
25797 3' -59.6 NC_005337.1 + 2857 0.67 0.702315
Target:  5'- gGAGUCCGCggaGCCGcgcgCCAGcGGGaacacgaucacggcCCCGCg -3'
miRNA:   3'- gCUCAGGUG---CGGUa---GGUC-UCC--------------GGGCG- -5'
25797 3' -59.6 NC_005337.1 + 3225 0.66 0.753355
Target:  5'- --cGUCCGCacCCAgggCCAgGAGGCgCGCg -3'
miRNA:   3'- gcuCAGGUGc-GGUa--GGU-CUCCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 3512 0.67 0.695428
Target:  5'- -aGGUCUGCGCgaaGUCCAccugcGAGGCCaCGUa -3'
miRNA:   3'- gcUCAGGUGCGg--UAGGU-----CUCCGG-GCG- -5'
25797 3' -59.6 NC_005337.1 + 6351 0.68 0.634663
Target:  5'- cCGcGUCCGCGuacuugcCCAgcaCCGGcucGGCCCGCa -3'
miRNA:   3'- -GCuCAGGUGC-------GGUa--GGUCu--CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 7013 0.71 0.452238
Target:  5'- gGAcGUCCGCGCCcgccUCCAGcaucAGGCCgaGCa -3'
miRNA:   3'- gCU-CAGGUGCGGu---AGGUC----UCCGGg-CG- -5'
25797 3' -59.6 NC_005337.1 + 8035 0.66 0.762702
Target:  5'- -aGGUCCACgGCCuUgCGGAGGgCCaGCu -3'
miRNA:   3'- gcUCAGGUG-CGGuAgGUCUCCgGG-CG- -5'
25797 3' -59.6 NC_005337.1 + 8962 0.67 0.705259
Target:  5'- gGAGUCCucaucguUGCUucgAUCCGcGGGCgCCGCa -3'
miRNA:   3'- gCUCAGGu------GCGG---UAGGUcUCCG-GGCG- -5'
25797 3' -59.6 NC_005337.1 + 9636 0.67 0.705259
Target:  5'- gGGGUggcguaCCuCGUC-UCCGGAGGCgCGCa -3'
miRNA:   3'- gCUCA------GGuGCGGuAGGUCUCCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 9944 0.68 0.635665
Target:  5'- gCGA--UCGCGCCgcGUCCAuGAGcGCCUGCg -3'
miRNA:   3'- -GCUcaGGUGCGG--UAGGU-CUC-CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 10985 0.67 0.685546
Target:  5'- aCGAgGUCgGuCGCCA-CCAGcugcucgucccAGGCCUGCu -3'
miRNA:   3'- -GCU-CAGgU-GCGGUaGGUC-----------UCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 11302 0.69 0.556063
Target:  5'- cCGGGucUCCACGCgGgcguuggCgCAGAGGUCCGUc -3'
miRNA:   3'- -GCUC--AGGUGCGgUa------G-GUCUCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 12330 0.67 0.684556
Target:  5'- gGAGUCCgcgugguggugcaGCGCCGUCC----GUCCGCg -3'
miRNA:   3'- gCUCAGG-------------UGCGGUAGGucucCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 12619 0.66 0.743906
Target:  5'- -aGGUCCACGaCC--UCGGGGGUcgCCGCg -3'
miRNA:   3'- gcUCAGGUGC-GGuaGGUCUCCG--GGCG- -5'
25797 3' -59.6 NC_005337.1 + 12818 0.67 0.675622
Target:  5'- uGAGaUCCGCGCCcgcGUCCAGcagcAGGUCUa- -3'
miRNA:   3'- gCUC-AGGUGCGG---UAGGUC----UCCGGGcg -5'
25797 3' -59.6 NC_005337.1 + 13801 0.71 0.443311
Target:  5'- uCGuGUCCGCGCgAUCCAGc-GCgCGCu -3'
miRNA:   3'- -GCuCAGGUGCGgUAGGUCucCGgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.