miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 3' -59.6 NC_005337.1 + 37249 0.66 0.753355
Target:  5'- --cGUCCACGUCgcaguugcgguuGUCC--AGGUCCGCg -3'
miRNA:   3'- gcuCAGGUGCGG------------UAGGucUCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 43895 0.66 0.753355
Target:  5'- uGAuGUgCACGCgCggCCggaAGAGGCCgCGCg -3'
miRNA:   3'- gCU-CAgGUGCG-GuaGG---UCUCCGG-GCG- -5'
25797 3' -59.6 NC_005337.1 + 53226 0.66 0.715031
Target:  5'- gCGAGcUCCGCGagauCAUggacaggcaCCAGAuacGGCCCGUg -3'
miRNA:   3'- -GCUC-AGGUGCg---GUA---------GGUCU---CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 26438 0.66 0.719892
Target:  5'- uCGucUCCACGCCGUagugcucCCAGAGGUacagacagaggcaCGCg -3'
miRNA:   3'- -GCucAGGUGCGGUA-------GGUCUCCGg------------GCG- -5'
25797 3' -59.6 NC_005337.1 + 20112 0.66 0.724735
Target:  5'- gCGAGagCGCGUCcUCCaccgAGAGGUCgGCg -3'
miRNA:   3'- -GCUCagGUGCGGuAGG----UCUCCGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 115553 0.66 0.743906
Target:  5'- aGAGgcgCCagcGCGCCGcagcUCCucgccGGGGCCCGa -3'
miRNA:   3'- gCUCa--GG---UGCGGU----AGGu----CUCCGGGCg -5'
25797 3' -59.6 NC_005337.1 + 109984 0.66 0.753355
Target:  5'- uCGAGcaCCACGCCcugCguGAGcGCCgGCc -3'
miRNA:   3'- -GCUCa-GGUGCGGua-GguCUC-CGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 23645 0.66 0.715031
Target:  5'- aCGAGa--GCGUCGUCCGGAGGgaccucgacCCCGg -3'
miRNA:   3'- -GCUCaggUGCGGUAGGUCUCC---------GGGCg -5'
25797 3' -59.6 NC_005337.1 + 3225 0.66 0.753355
Target:  5'- --cGUCCGCacCCAgggCCAgGAGGCgCGCg -3'
miRNA:   3'- gcuCAGGUGc-GGUa--GGU-CUCCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 89603 0.66 0.714057
Target:  5'- -cGG-CCACGCCuAUCuCGGAGucgcccacguagcGCCCGCu -3'
miRNA:   3'- gcUCaGGUGCGG-UAG-GUCUC-------------CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 129596 0.66 0.76641
Target:  5'- -aAGUCCGCgcgagcgaccguggaGCuCGUCCGGcGGCUCGUg -3'
miRNA:   3'- gcUCAGGUG---------------CG-GUAGGUCuCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 95822 0.66 0.743906
Target:  5'- gGGGUCCAUGuCCGg-CAGcAGGCagaaCCGCg -3'
miRNA:   3'- gCUCAGGUGC-GGUagGUC-UCCG----GGCG- -5'
25797 3' -59.6 NC_005337.1 + 59043 0.66 0.762702
Target:  5'- cCGAcUUCGCGCCGcuggcggacgacUCCGGGuGGCUgGCg -3'
miRNA:   3'- -GCUcAGGUGCGGU------------AGGUCU-CCGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 98256 0.66 0.724735
Target:  5'- -cAGUCCGuguCGCCGUCCAcGAcGGuggucaCCCGCu -3'
miRNA:   3'- gcUCAGGU---GCGGUAGGU-CU-CC------GGGCG- -5'
25797 3' -59.6 NC_005337.1 + 37684 0.66 0.743906
Target:  5'- --uGUUCACGcCCGUgUGGAcGCCCGCg -3'
miRNA:   3'- gcuCAGGUGC-GGUAgGUCUcCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 73356 0.66 0.7228
Target:  5'- cCGcGUgUACGCCAUCCugcaggaacucucGGAGgcguacucggcgcGCCCGCa -3'
miRNA:   3'- -GCuCAgGUGCGGUAGG-------------UCUC-------------CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 45522 0.66 0.76641
Target:  5'- cCGGGUCCuCGgCGUCgGGAgccggugcuggagucGGCgCCGCc -3'
miRNA:   3'- -GCUCAGGuGCgGUAGgUCU---------------CCG-GGCG- -5'
25797 3' -59.6 NC_005337.1 + 68179 0.66 0.743906
Target:  5'- cCGAGUacgcCCugaGCGCgGccCCGGGGGCgCCGCu -3'
miRNA:   3'- -GCUCA----GG---UGCGgUa-GGUCUCCG-GGCG- -5'
25797 3' -59.6 NC_005337.1 + 86427 0.66 0.721832
Target:  5'- cCGAcGUgCACucgcggaagagacgGUCGUCgCAGAGGCCgGCg -3'
miRNA:   3'- -GCU-CAgGUG--------------CGGUAG-GUCUCCGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 56566 0.66 0.724735
Target:  5'- cCGGGUCCcaguucuacuuCGCCAUgCUGGuGGCgCGCu -3'
miRNA:   3'- -GCUCAGGu----------GCGGUA-GGUCuCCGgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.