miRNA display CGI


Results 1 - 20 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 3' -59.6 NC_005337.1 + 33259 1.12 0.000828
Target:  5'- gCGAGUCCACGCCAUCCAGAGGCCCGCg -3'
miRNA:   3'- -GCUCAGGUGCGGUAGGUCUCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 19052 0.79 0.146623
Target:  5'- gGGGUCCGCGCCcaucUUCAGcAGcGCCCGCa -3'
miRNA:   3'- gCUCAGGUGCGGu---AGGUC-UC-CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 127964 0.76 0.23914
Target:  5'- gGAGaUCCGCGCCAUgCGcGAGGUgCGCu -3'
miRNA:   3'- gCUC-AGGUGCGGUAgGU-CUCCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 57402 0.76 0.244858
Target:  5'- cCGAGauuUCCGCcgaGCCGUCCGGAcGCCCGUc -3'
miRNA:   3'- -GCUC---AGGUG---CGGUAGGUCUcCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 131716 0.76 0.248927
Target:  5'- gGAGUCCGCGCUGUacgacuauucuucaCCcGGGGCCCGg -3'
miRNA:   3'- gCUCAGGUGCGGUA--------------GGuCUCCGGGCg -5'
25797 3' -59.6 NC_005337.1 + 94720 0.75 0.281569
Target:  5'- aCGAGUaCCcgaGCGCCcgCCGGGGcGCCgGCa -3'
miRNA:   3'- -GCUCA-GG---UGCGGuaGGUCUC-CGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 101074 0.75 0.288096
Target:  5'- aGAGgcgcgCCcCGCCGUCgGGAGGgCCCGUc -3'
miRNA:   3'- gCUCa----GGuGCGGUAGgUCUCC-GGGCG- -5'
25797 3' -59.6 NC_005337.1 + 99642 0.74 0.294071
Target:  5'- gCGAGacgCC-CGCCGUCUucaacgaggagcaGGAGGUCCGCg -3'
miRNA:   3'- -GCUCa--GGuGCGGUAGG-------------UCUCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 131186 0.74 0.308388
Target:  5'- gGAGUCgCugGCCGUCgCcGAGGUgCGCg -3'
miRNA:   3'- gCUCAG-GugCGGUAG-GuCUCCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 69503 0.74 0.315391
Target:  5'- uCGaAGUCCaggaACGCCucgCCGGAGGCCuCGUc -3'
miRNA:   3'- -GC-UCAGG----UGCGGua-GGUCUCCGG-GCG- -5'
25797 3' -59.6 NC_005337.1 + 23503 0.73 0.329754
Target:  5'- -cGGUCCAUGuCCAUCCGG-GGCUCGa -3'
miRNA:   3'- gcUCAGGUGC-GGUAGGUCuCCGGGCg -5'
25797 3' -59.6 NC_005337.1 + 123768 0.73 0.344594
Target:  5'- uCGGcGUCUACGCCAUCUGGgugaAGGacCCCGCg -3'
miRNA:   3'- -GCU-CAGGUGCGGUAGGUC----UCC--GGGCG- -5'
25797 3' -59.6 NC_005337.1 + 29161 0.73 0.355265
Target:  5'- gGAGcgCCGCGUCGUCCAGcuccggagacgcggcGGcGCCCGUg -3'
miRNA:   3'- gCUCa-GGUGCGGUAGGUC---------------UC-CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 33023 0.73 0.367742
Target:  5'- uCGcGUCCGCGCCGUCCAgcgcGAGcacGCgCGCg -3'
miRNA:   3'- -GCuCAGGUGCGGUAGGU----CUC---CGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 78289 0.73 0.367742
Target:  5'- aGuAGUUgGCGCCGuacUCCAGGcuggggagguGGCCCGCg -3'
miRNA:   3'- gC-UCAGgUGCGGU---AGGUCU----------CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 90843 0.72 0.383756
Target:  5'- gGGGUgCCGCucGCCGUCCGcGGGCUCGUa -3'
miRNA:   3'- gCUCA-GGUG--CGGUAGGUcUCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 18323 0.72 0.391935
Target:  5'- gCGcGUCCAUgGCCAUCUGGugguccgagcacGGGCCCGUg -3'
miRNA:   3'- -GCuCAGGUG-CGGUAGGUC------------UCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 98509 0.72 0.391935
Target:  5'- cCGAGuUCCGCGgCAaggCCGGGGggaGCCCGCc -3'
miRNA:   3'- -GCUC-AGGUGCgGUa--GGUCUC---CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 126208 0.72 0.417141
Target:  5'- gCGcGUCCuCGCgGUCgcggaGGAGGCCCGUg -3'
miRNA:   3'- -GCuCAGGuGCGgUAGg----UCUCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 65983 0.71 0.42576
Target:  5'- gCGcGUCCACGCCG-CCGGccGgCCGCa -3'
miRNA:   3'- -GCuCAGGUGCGGUaGGUCucCgGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.