miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 3' -59.6 NC_005337.1 + 1253 0.69 0.546274
Target:  5'- aCGAG-CCGgGCgAUCagccgcaGGAuGGCCCGCg -3'
miRNA:   3'- -GCUCaGGUgCGgUAGg------UCU-CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 76143 0.71 0.461262
Target:  5'- cCGAuccGUCCACGUCGUCgaagaUGGAGGCCuCGUu -3'
miRNA:   3'- -GCU---CAGGUGCGGUAG-----GUCUCCGG-GCG- -5'
25797 3' -59.6 NC_005337.1 + 62356 0.7 0.479591
Target:  5'- gGGGUCCACGCUGUCgucgaAGGcGGUgCGCa -3'
miRNA:   3'- gCUCAGGUGCGGUAGg----UCU-CCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 1156 0.7 0.488888
Target:  5'- gGGGagCGCGCCGg-CGGAgcGGCCCGCu -3'
miRNA:   3'- gCUCagGUGCGGUagGUCU--CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 70774 0.7 0.498268
Target:  5'- aCGAGgCCGCgGCCGaCuCGGAGGCCaUGCg -3'
miRNA:   3'- -GCUCaGGUG-CGGUaG-GUCUCCGG-GCG- -5'
25797 3' -59.6 NC_005337.1 + 54101 0.7 0.507728
Target:  5'- gCGcGUCCGCGCg--CCGGcacGGCCCGUa -3'
miRNA:   3'- -GCuCAGGUGCGguaGGUCu--CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 98554 0.7 0.52398
Target:  5'- ----aCCACGCCGUCCacgcaccgguagacGGA-GCCCGCg -3'
miRNA:   3'- gcucaGGUGCGGUAGG--------------UCUcCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 25707 0.7 0.525905
Target:  5'- gCGGGUuguccggCCGCGCCG-CCAGcgucAGGCgCGCg -3'
miRNA:   3'- -GCUCA-------GGUGCGGUaGGUC----UCCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 2492 0.69 0.539455
Target:  5'- uGAcGUCCGCGCCGaggcucagcagcugCCgcaccucGGAGGCCCGg -3'
miRNA:   3'- gCU-CAGGUGCGGUa-------------GG-------UCUCCGGGCg -5'
25797 3' -59.6 NC_005337.1 + 104201 0.71 0.452238
Target:  5'- gCGAGcgCCGCGCCAUCCucGGGGacaaguucaCCaCGCg -3'
miRNA:   3'- -GCUCa-GGUGCGGUAGGu-CUCC---------GG-GCG- -5'
25797 3' -59.6 NC_005337.1 + 7013 0.71 0.452238
Target:  5'- gGAcGUCCGCGCCcgccUCCAGcaucAGGCCgaGCa -3'
miRNA:   3'- gCU-CAGGUGCGGu---AGGUC----UCCGGg-CG- -5'
25797 3' -59.6 NC_005337.1 + 13801 0.71 0.443311
Target:  5'- uCGuGUCCGCGCgAUCCAGc-GCgCGCu -3'
miRNA:   3'- -GCuCAGGUGCGgUAGGUCucCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 19052 0.79 0.146623
Target:  5'- gGGGUCCGCGCCcaucUUCAGcAGcGCCCGCa -3'
miRNA:   3'- gCUCAGGUGCGGu---AGGUC-UC-CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 57402 0.76 0.244858
Target:  5'- cCGAGauuUCCGCcgaGCCGUCCGGAcGCCCGUc -3'
miRNA:   3'- -GCUC---AGGUG---CGGUAGGUCUcCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 94720 0.75 0.281569
Target:  5'- aCGAGUaCCcgaGCGCCcgCCGGGGcGCCgGCa -3'
miRNA:   3'- -GCUCA-GG---UGCGGuaGGUCUC-CGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 29161 0.73 0.355265
Target:  5'- gGAGcgCCGCGUCGUCCAGcuccggagacgcggcGGcGCCCGUg -3'
miRNA:   3'- gCUCa-GGUGCGGUAGGUC---------------UC-CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 78289 0.73 0.367742
Target:  5'- aGuAGUUgGCGCCGuacUCCAGGcuggggagguGGCCCGCg -3'
miRNA:   3'- gC-UCAGgUGCGGU---AGGUCU----------CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 18323 0.72 0.391935
Target:  5'- gCGcGUCCAUgGCCAUCUGGugguccgagcacGGGCCCGUg -3'
miRNA:   3'- -GCuCAGGUG-CGGUAGGUC------------UCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 36695 0.71 0.434484
Target:  5'- aCGGcGUCCACGgaGUUCAGGGGCuuGUg -3'
miRNA:   3'- -GCU-CAGGUGCggUAGGUCUCCGggCG- -5'
25797 3' -59.6 NC_005337.1 + 61879 0.71 0.434484
Target:  5'- ----gUCGCGCCAccCCGGGGGCUCGCu -3'
miRNA:   3'- gcucaGGUGCGGUa-GGUCUCCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.